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Department of Molecular and Cell Biology, University of California, Berkeley, California 94720, USA
Reprint request to: Susan Marqusee, Department of Molecular and Cell Biology, University of California, 229 Stanley Hall, Berkeley, CA 94720, USA; e-mail: marqusee{at}uclink4.berkeley.edu; fax: (510) 643-9290.
To investigate the contribution of the folding cores to the thermodynamic stability of RNases H, we used rational design to create two chimeras composed of parts of a thermophilic and a mesophilic RNase H. Each chimera combines the folding core from one parent protein and the remaining parts of the other. Both chimeras form active, well-folded RNases H. Stability curves, based on CD-monitored chemical denaturations, show that the chimera with the thermophilic core is more stable, has a higher midpoint of thermal denaturation, and a lower change in heat capacity (
Cp) upon unfolding than the chimera with the mesophilic core. A possible explanation for the low
Cp of both the parent thermophilic RNase H and the chimera with the thermophilic core is the residual structure in the denatured state. On the basis of the studied parameters, the chimera with the thermophilic core resembles a true thermophilic protein. Our results suggest that the folding core plays an essential role in conferring thermodynamic parameters to RNases H.
Keywords: Thermodynamic stability of proteins; chimera; stability curves; heat capacity; folding core; ribonuclease H
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