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Protein Science (2004), 13:659-667. Published by Cold Spring Harbor Laboratory Press. Copyright © 2004 The Protein Society
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Structure of the archaeal translation initiation factor aIF2{beta} from Methanobacterium thermoautotrophicum: Implications for translation initiation

Pablo Gutiérrez1,4, Michael J. Osborne1,4, Nadeem Siddiqui1,4, Jean-François Trempe1,4, Cheryl Arrowsmith2,3 and Kalle Gehring1,4

1 McGill University, Department of Biochemistry, McIntyre Medical Science Building, Montréal, Québec H3G 1Y6, Canada
2 Department of Medical Biophysics, University of Toronto, Toronto, Ontario M5G 2M9, Canada
3 Ontario Cancer Institute, Toronto, Ontario M5G 2M9, Canada
4 Montreal Joint Centre for Structural Biology, Montréal, Québec, Canada

(RECEIVED November 4, 2003; FINAL REVISION December 1, 2003; ACCEPTED December 1, 2003)



Abstract

aIF2{beta} is the archaeal homolog of eIF2{beta}, a member of the eIF2 heterotrimeric complex, implicated in the delivery of Met-tRNAiMet to the 40S ribosomal subunit. We have determined the solution structure of the intact {beta}-subunit of aIF2 from Methanobacterium thermoautotrophicum. aIF2{beta} is composed of an unfolded N terminus, a mixed {alpha}/{beta} core domain and a C-terminal zinc finger. NMR data shows the two folded domains display restricted mobility with respect to each other. Analysis of the aIF2{gamma} structure docked to tRNA allowed the identification of a putative binding site for the {beta}-subunit in the ternary translation complex. Based on structural similarity and biochemical data, a role for the different secondary structure elements is suggested.

Keywords: aIF2{beta}; translation initiation; archaebacteria; NMR


Reprint requests to: Kalle Gehring, McGill University, Department of Biochemistry, McIntyre Medical Science Building, 3655 Promenade Sir William Osler, Montréal, Québec H3G 1Y6, Canada; e-mail: Kalle. Gehring{at}mcgill.ca; fax: (514) 398-7384.

Article and publication are at http://www.proteinscience.org/cgi/doi/10.1110/ps.03506604.


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