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Protein Science (2006), 15:722-730. Published by Cold Spring Harbor Laboratory Press. Copyright © 2006 The Protein Society
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Conformational changes of the glucocorticoid receptor ligand binding domain induced by ligand and cofactor binding, and the location of cofactor binding sites determined by hydrogen/deuterium exchange mass spectrometry

Lee Frego and Walter Davidson

Boehringer Ingelheim Pharmaceuticals, Research and Development Center, Ridgefield, Connecticut 06877, USA

(RECEIVED August 19, 2005; FINAL REVISION January 10, 2006; ACCEPTED January 13, 2006)

HXMS (hydrogen/deuterium exchange mass spectrometry) of the glucocorticoid receptor ligand-binding domain (GR LBD) complexed with the agonist dexamethasone and the antagonist RU-486 is described. Variations in the rates of exchange were observed in regions consistent with the published crystal structures of GR LBD complexed with RU-486 when compared with the GR dexamethasone complex. We also report the HXMS results for agonist-bound GR LBD with the coactivator transcriptional intermediary factor 2 (TIF2) and anatagonist-bound GR LBD with nuclear receptor corepressor (NCoR). Alterations in exchange rates observed for agonist-bound GR LBD with TIF2 present were consistent with the published crystal structural contacts for the complex. Alterations in exchange rates observed for antagonist-bound GR LBD with NCoR were a subset of those observed with TIF2 binding, suggesting a common or overlapping binding site for coactivator and corepressor.

Keywords: glucocorticoid receptor; H/D exchange; mass spectrometry



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