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Protein Science (2006), 15:2107-2119. Published by Cold Spring Harbor Laboratory Press. Copyright © 2006 The Protein Society
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Identification of an alcohol binding site in the first cysteine-rich domain of protein kinase C {delta}

Joydip Das1,2, Xiaojuan Zhou1 and Keith W. Miller1,2

1 Department of Anesthesia and Critical Care, Massachusetts General Hospital, Boston, Massachusetts 02114, USA
2 Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, USA

(RECEIVED March 23, 2006; FINAL REVISION June 1, 2006; ACCEPTED June 21, 2006)

Protein kinase C (PKC) is an important signal transduction protein whose cysteine-rich regulatory domain C1 has been proposed to interact with general anesthetics in both of its diacylglycerol/phorbol ester–binding subdomains, the tandem repeats C1A and C1B. Previously, we identified an allosteric binding site on one of the two cysteine-rich domains, PKC{delta} C1B. To test the hypothesis that there is an additional anesthetic site on the other cysteine-rich subdomain, C1A, we subcloned, expressed in Escherichia coli, purified, and characterized mouse PKC{delta} C1A. Octanol and butanol both quenched the intrinsic fluorescence of PKC{delta} C1A in a saturable manner, suggesting the presence of a binding site. To locate this site, PKC{delta} C1A was photolabeled with three diazirine-containing alkanols, 3-azioctanol, 7-azioctanol, and 3-azibutanol. Mass spectrometry revealed that at low concentrations all three photoincorporated into PKC{delta} C1A with a stoichiometry of 1:1 in the labeled fraction, but higher stoichiometries occurred at higher concentrations, particularly with azibutanol. Photocomplexes of PKC{delta} C1A with azioctanols were separated from the unlabeled protein by HPLC, reduced, alkylated, digested with trypsin, and sequenced by mass spectrometry. All the azioctanols photolabeled PKC{delta} C1A at residue Tyr-29, corresponding to Tyr-187 of the full-length PKC{delta}, and at a neighboring residue, Lys-40, suggesting there is an alcohol site in this vicinity. In addition, Glu-2 was photolabeled more efficiently by 3-azibutanol than by the azioctanols, suggesting the existence of a second, smaller site.

Keywords: protein kinase C; diazirine; mass spectrometry; anesthesia; photolabeling; fluorescence; binding site



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