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Protein Science (2007), 16:355-361. Published by Cold Spring Harbor Laboratory Press. Copyright © 2007 The Protein Society
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Kinetic analysis of the binding of monomeric and dimeric ephrins to Eph receptors: Correlation to function in a growth cone collapse assay

Kumar B. Pabbisetty1,5, Xin Yue2, Chen Li3, Juha-Pekka Himanen3, Renping Zhou2, Dimitar B. Nikolov3, and Longqin Hu1,4

1 Department of Pharmaceutical Chemistry, Ernest Mario School of Pharmacy, Rutgers, The State University of New Jersey, Piscataway, New Jersey 08854, USA
2 Department of Chemical Biology, Ernest Mario School of Pharmacy, Rutgers, The State University of New Jersey, Piscataway, New Jersey 08854, USA
3 The Structural Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York 10021, USA
4 The Cancer Institute of New Jersey, New Brunswick, New Jersey 08901, USA

(RECEIVED October 12, 2006; FINAL REVISION December 8, 2006; ACCEPTED December 16, 2006)

Eph receptors and ephrins play important roles in regulating cell migration and positioning during both normal and oncogenic tissue development. Using a surface plasma resonance (SPR) biosensor, we examined the binding kinetics of representative monomeric and dimeric ephrins to their corresponding Eph receptors and correlated the apparent binding affinity with their functional activity in a neuronal growth cone collapse assay. Our results indicate that the Eph receptor binding of dimeric ephrins, formed through fusion with disulfide-linked Fc fragments, is best described using a bivalent analyte model as a two-step process involving an initial monovalent 2:1 binding followed by a second bivalent 2:2 binding. The bivalent binding dramatically decreases the apparent dissociation rate constants with little effect on the initial association rate constants, resulting in a 30- to 6000-fold decrease in apparent equilibrium dissociation constants for the binding of dimeric ephrins to Eph receptors relative to their monomeric counterparts. Interestingly, the change was more prominent in the A-class ephrin/Eph interactions than in the B-class of ephrins to Eph receptors. The increase in apparent binding affinities correlated well with increased activation of Eph receptors and the resulting growth cone collapse. Our kinetic analysis and correlation of binding affinity with function helped us better understand the interactions between ephrins and Eph receptors and should be useful in the design of inhibitors that interfere with the interactions.

Keywords: ephrin; Eph receptor; surface plasmon resonance; receptor dimerization; growth cone collapse



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[Abstract] [Full Text] [PDF]




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