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Conductance and amantadine binding of a pore formed by a lysine-flanked transmembrane domain of SARS coronavirus envelope protein

¹ School of Biological Sciences, Nanyang Technological University, Singapore
² Institute of Molecular and Cell Biology, Proteos, Singapore

(RECEIVED December 15, 2006; FINAL REVISION April 20, 2007; ACCEPTED May 28, 2007)

The coronavirus responsible for the severe acute respiratory syndrome (SARS-CoV) contains a small envelope protein, E, with putative involvement in host cell apoptosis and virus morphogenesis. It has been suggested that E protein can form a membrane destabilizing transmembrane (TM) hairpin, or homooligomerize to form a regular TM -helical bundle. We have shown previously that the topology of the -helical putative TM domain of E protein (ETM), flanked by two lysine residues at C and N termini to improve solubility, is consistent with a regular TM -helix, with orientational parameters in lipid bilayers that are consistent with a homopentameric model. Herein, we show that this peptide, reconstituted in lipid bilayers, shows sodium conductance. Channel activity is inhibited by the anti-influenza drug amantadine, which was found to bind our preparation with moderate affinity. Results obtained from single or double mutants indicate that the organization of the transmembrane pore is consistent with our previously reported pentameric -helical bundle model.

Keywords: structure/function studies; viral protein topologies; structural proteins; protein structure prediction

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