Protein Science Sheba protein
HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
 QUICK SEARCH:   [advanced]


     


This Article
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Right arrow Citation Map
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrow reprints & permissions
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by WITHERS, S. G.
Right arrow Articles by AEBERSOLD, R.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by WITHERS, S. G.
Right arrow Articles by AEBERSOLD, R.
Social Bookmarking
 Add to CiteULike   Add to Connotea   Add to Del.icio.us   Add to Digg   Add to Reddit   Add to Technorati  
What's this?

Protein Science, Vol 4, Issue 3 361-372, Copyright © 1995 by Cold Spring Harbor Laboratory Press


REVIEWS

Approaches to labeling and identification of active site residues in glycosidases

S. G. WITHERS and R. AEBERSOLD
Department of Chemistry, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada

Glycosidases play a key role in a number of biological processes and, as such, are of considerable clinical and biotechnological importance. Knowledge of the identities of catalytically important active site residues is essential for understanding the catalytic mechanism, for enzyme classification, and for targeted bioengineering of glycosidases with altered characteristics. Here we review and discuss traditional strategies and novel approaches based on tandem mass spectrometry for the identification of the key active site residues in glycosidases.
Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us   Add to Digg Digg   Add to Reddit Reddit   Add to Technorati Technorati    What's this?


This article has been cited by other articles:


Home page
J. Biol. Chem.Home page
K. Piens, R. Faure, G. Sundqvist, M. J. Baumann, M. Saura-Valls, T. T. Teeri, S. Cottaz, A. Planas, H. Driguez, and H. Brumer
Mechanism-based Labeling Defines the Free Energy Change for Formation of the Covalent Glycosyl-enzyme Intermediate in a Xyloglucan endo-Transglycosylase
J. Biol. Chem., August 8, 2008; 283(32): 21864 - 21872.
[Abstract] [Full Text] [PDF]


Home page
GlycobiologyHome page
B. P Rempel and S. G Withers
Covalent inhibitors of glycosidases and their applications in biochemistry and biology
Glycobiology, August 1, 2008; 18(8): 570 - 586.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
V. Vathipadiekal and M. Rao
Inhibition of 1,4-{beta}-D-Xylan Xylanohydrolase by the Specific Aspartic Protease Inhibitor Pepstatin: PROBING THE TWO-STEP INHIBITION MECHANISM
J. Biol. Chem., November 5, 2004; 279(45): 47024 - 47033.
[Abstract] [Full Text] [PDF]


Home page
GlycobiologyHome page
J. Feng, A. V. Romaniouk, S. K. Samal, and I. K. Vijay
Processing enzyme glucosidase II: proposed catalytic residues and developmental regulation during the ontogeny of the mouse mammary gland
Glycobiology, October 1, 2004; 14(10): 909 - 921.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
C. Dash, V. Vathipadiekal, S. P. George, and M. Rao
Slow-Tight Binding Inhibition of Xylanase by an Aspartic Protease Inhibitor. KINETIC PARAMETERS AND CONFORMATIONAL CHANGES THAT DETERMINE THE AFFINITY AND SELECTIVITY OF THE BIFUNCTIONAL NATURE OF THE INHIBITOR
J. Biol. Chem., May 10, 2002; 277(20): 17978 - 17986.
[Abstract] [Full Text] [PDF]


Home page
Protein Eng Des SelHome page
T. Debeche, C. Bliard, P. Debeire, and M. J. O'Donohue
Probing the catalytically essential residues of the {alpha}-L-arabinofuranosidase from Thermobacillus xylanilyticus
Protein Eng. Des. Sel., January 1, 2002; 15(1): 21 - 28.
[Abstract] [Full Text] [PDF]


Home page
GlycobiologyHome page
S. Fabrega, P. Durand, P. Codogno, C. Bauvy, C. Delomenie, B. Henrissat, B. M. Martin, C. McKinney, E. I. Ginns, J.-P. Mornon, et al.
Human glucocerebrosidase: heterologous expression of active site mutants in murine null cells
Glycobiology, November 1, 2000; 10(11): 1217 - 1224.
[Abstract] [Full Text] [PDF]


Home page
Hum Mol GenetHome page
P. Durand, S. Fabrega, B. Henrissat, J.-P. Mornon, and P. Lehn
Structural features of normal and mutant human lysosomal glycoside hydrolases deduced from bioinformatics analysis
Hum. Mol. Genet., April 1, 2000; 9(6): 967 - 977.
[Abstract] [Full Text] [PDF]


Home page
Protein Eng Des SelHome page
T. Laitinen, J. Rouvinen, and M. Perakyla
Inversion of the roles of the nucleophile and acid/base catalysts in the covalent binding of epoxyalkyl xyloside inhibitor to the catalytic glutamates of endo-1,4-{beta}-xylanase (XYNII): a molecular dynamics study
Protein Eng. Des. Sel., April 1, 2000; 13(4): 247 - 252.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
S. Dan, I. Marton, M. Dekel, B.-A. Bravdo, S. He, S. G. Withers, and O. Shoseyov
Cloning, Expression, Characterization, and Nucleophile Identification of Family 3, Aspergillus niger beta -Glucosidase
J. Biol. Chem., February 18, 2000; 275(7): 4973 - 4980.
[Abstract] [Full Text] [PDF]


Home page
J. Bacteriol.Home page
J. Thompson, S. B. Ruvinov, D. I. Freedberg, and B. G. Hall
Cellobiose-6-Phosphate Hydrolase (CelF) of Escherichia coli: Characterization and Assignment to the Unusual Family 4 of Glycosylhydrolases
J. Bacteriol., December 1, 1999; 181(23): 7339 - 7345.
[Abstract] [Full Text]


Home page
J. Biol. Chem.Home page
S. Howard, S. He, and S. G. Withers
Identification of the Active Site Nucleophile in Jack Bean alpha -Mannosidase Using 5-Fluoro-beta -L-Gulosyl Fluoride
J. Biol. Chem., January 23, 1998; 273(4): 2067 - 2072.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
S. He and S. G. Withers
Assignment of Sweet Almond beta -Glucosidase as a Family 1 Glycosidase and Identification of Its Active Site Nucleophile
J. Biol. Chem., October 3, 1997; 272(40): 24864 - 24867.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
L. F. Mackenzie, G. S. Brooke, J. F. Cutfield, P. A. Sullivan, and S. G. Withers
Identification of Glu-330 as the Catalytic Nucleophile of Candida albicans Exo-beta -(1,3)-glucanase
J. Biol. Chem., February 7, 1997; 272(6): 3161 - 3167.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
J. D. McCarter and S. G. Withers
Unequivocal Identification of Asp-214 as the Catalytic Nucleophile of Saccharomyces cerevisiae alpha-Glucosidase Using 5-Fluoro Glycosyl Fluorides
J. Biol. Chem., March 22, 1996; 271(12): 6889 - 6894.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
S. A. Short, S. R. Armstrong, S. E. Ealick, and D. J. T. Porter
Active Site Amino Acids That Participate in the Catalytic Mechanism of Nucleoside 2`-Deoxyribosyltransferase
J. Biol. Chem., March 1, 1996; 271(9): 4978 - 4987.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
C. Braun, G. D. Brayer, and S. G. Withers
Mechanism-based Inhibition of Yeast alpha-Glucosidase and Human Pancreatic alpha-Amylase by a New Class of Inhibitors
J. Biol. Chem., November 10, 1995; 270(45): 26778 - 26781.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
B. Liessem, G. J. Glombitza, F. Knoll, J. Lehmann, J. Kellermann, F. Lottspeich, and K. Sandhoff
Photoaffinity Labeling of Human Lysosomal beta-Hexosaminidase B
J. Biol. Chem., October 6, 1995; 270(40): 23693 - 23699.
[Abstract] [Full Text] [PDF]




HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
Copyright © 1995 by The Protein Society.