|
|
||||||||
Protein Science, Vol 7, Issue 4 815-836, Copyright © 1998 by Cold Spring Harbor Laboratory Press
REVIEWS |
A. R. KHAN and MNG. JAMES
MRC Group in Protein Structure and Function, Department of Biochemistry, University of Alberta, Edmonton, Alberta T6G 2H7, Canada
Proteolytic enzymes are synthesized as inactive precursors, or ``zymogens,'' to prevent unwanted protein degradation, and to enable spatial and temporal regulation of proteolytic activity. Upon sorting or appropriate compartmentalization, zymogen conversion to the active enzyme typically involves limited proteolysis and removal of an ``activation segment.'' The sizes of activation segments range from dipeptide units to independently folding domains comprising more than 100 residues. A common form of the activation segment is an N-terminal extension of the mature enzyme, or ``prosegment,'' that sterically blocks the active site, and thereby prevents binding of substrates. In addition to their inhibitory role, prosegments are frequently important for the folding, stability, and/or intracellular sorting of the zymogen. The mechanisms of conversion to active enzymes are diverse in nature, ranging from enzymatic or nonenzymatic cofactors that trigger activation, to a simple change in pH that results in conversion by an autocatalytic mechanism. Recent X-ray crystallographic studies of zymogens and comparisons with their active counterparts have identified the structural changes that accompany conversion. This review will focus upon the structural basis for inhibition by activation segments, as well as the molecular events that lead to the conversion of zymogens to active enzymes.
This article has been cited by other articles:
![]() |
A. Doucet, G. S. Butler, D. Rodriguez, A. Prudova, and C. M. Overall Metadegradomics: Toward in Vivo Quantitative Degradomics of Proteolytic Post-translational Modifications of the Cancer Proteome Mol. Cell. Proteomics, October 1, 2008; 7(10): 1925 - 1951. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. Toso, H. Zhu, and R. M. Camire The Conformational Switch from the Factor X Zymogen to Protease State Mediates Exosite Expression and Prothrombinase Assembly J. Biol. Chem., July 4, 2008; 283(27): 18627 - 18635. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. A. Golabek, N. Dolzhanskaya, M. Walus, K. E. Wisniewski, and E. Kida Prosegment of Tripeptidyl Peptidase I Is a Potent, Slow-binding Inhibitor of Its Cognate Enzyme J. Biol. Chem., June 13, 2008; 283(24): 16497 - 16504. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. Ida, M. Kurabayashi, M. Suguro, Y. Hiruma, T. Hikima, M. Yamomoto, and H. Suzuki Structural Basis of Proteolytic Activation of L-Phenylalanine Oxidase from Pseudomonas sp. P-501 J. Biol. Chem., June 13, 2008; 283(24): 16584 - 16590. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. D. Spencer, N. C. J. Gibbons, M. Bohm, and K. U. Schallreuter The Ca2+-Binding Capacity of Epidermal Furin Is Disrupted by H2O2-Mediated Oxidation in Vitiligo Endocrinology, April 1, 2008; 149(4): 1638 - 1645. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. Frischknecht, A. Fejtova, M. Viesti, A. Stephan, and P. Sonderegger Activity-Induced Synaptic Capture and Exocytosis of the Neuronal Serine Protease Neurotrypsin J. Neurosci., February 13, 2008; 28(7): 1568 - 1579. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Janoir, S. Pechine, C. Grosdidier, and A. Collignon Cwp84, a Surface-Associated Protein of Clostridium difficile, Is a Cysteine Protease with Degrading Activity on Extracellular Matrix Proteins J. Bacteriol., October 15, 2007; 189(20): 7174 - 7180. [Abstract] [Full Text] [PDF] |
||||
![]() |
H. Zhu, R. Toso, and R. M. Camire Inhibitory Sequences within the B-domain Stabilize Circulating Factor V in an Inactive State J. Biol. Chem., May 18, 2007; 282(20): 15033 - 15039. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. J. Gorman, Y. Wang, H. Jiang, and M. R. Kanost Manduca sexta Hemolymph Proteinase 21 Activates Prophenoloxidase-activating Proteinase 3 in an Insect Innate Immune Response Proteinase Cascade J. Biol. Chem., April 20, 2007; 282(16): 11742 - 11749. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. Kirchhofer, M. T. Lipari, L. Santell, K. L. Billeci, H. R. Maun, W. N. Sandoval, P. Moran, J. Ridgway, C. Eigenbrot, and R. A. Lazarus Utilizing the activation mechanism of serine proteases to engineer hepatocyte growth factor into a Met antagonist PNAS, March 27, 2007; 104(13): 5306 - 5311. [Abstract] [Full Text] [PDF] |
||||
![]() |
I. P. Michael, G. Pampalakis, S. D. Mikolajczyk, J. Malm, G. Sotiropoulou, and E. P. Diamandis Human Tissue Kallikrein 5 Is a Member of a Proteolytic Cascade Pathway Involved in Seminal Clot Liquefaction and Potentially in Prostate Cancer Progression J. Biol. Chem., May 5, 2006; 281(18): 12743 - 12750. [Abstract] [Full Text] [PDF] |
||||
![]() |
V. Rhiemeier, U. Breitenbach, K. H. Richter, C. Gebhardt, I. Vogt, B. Hartenstein, G. Furstenberger, C. Mauch, J. Hess, and P. Angel A Novel Aspartic Proteinase-Like Gene Expressed in Stratified Epithelia and Squamous Cell Carcinoma of the Skin Am. J. Pathol., April 1, 2006; 168(4): 1354 - 1364. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. K. Kim, I. S. Yang, H. J. Shin, K. J. Cho, E. K. Ryu, S. H. Kim, S. S. Park, and K. H. Kim Insight into autoproteolytic activation from the structure of cephalosporin acylase: A protein with two proteolytic chemistries PNAS, February 7, 2006; 103(6): 1732 - 1737. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. Friedrich, P. Panizzi, S.-I. Kawabata, W. Bode, P. E. Bock, and P. Fuentes-Prior Structural Basis for Reduced Staphylocoagulase-mediated Bovine Prothrombin Activation J. Biol. Chem., January 13, 2006; 281(2): 1188 - 1195. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. Panizzi, R. Friedrich, P. Fuentes-Prior, K. Richter, P. E. Bock, and W. Bode Fibrinogen Substrate Recognition by Staphylocoagulase{middle dot}(Pro)thrombin Complexes J. Biol. Chem., January 13, 2006; 281(2): 1179 - 1187. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. P. Bianchini, S. J. Orcutt, P. Panizzi, P. E. Bock, and S. Krishnaswamy Ratcheting of the substrate from the zymogen to proteinase conformations directs the sequential cleavage of prothrombin by prothrombinase PNAS, July 19, 2005; 102(29): 10099 - 10104. [Abstract] [Full Text] [PDF] |
||||
![]() |
I. P. Michael, G. Sotiropoulou, G. Pampalakis, A. Magklara, M. Ghosh, G. Wasney, and E. P. Diamandis Biochemical and Enzymatic Characterization of Human Kallikrein 5 (hK5), a Novel Serine Protease Potentially Involved in Cancer Progression J. Biol. Chem., April 15, 2005; 280(15): 14628 - 14635. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. Vanterpool, F. Roy, L. Sandberg, and H. M. Fletcher Altered Gingipain Maturation in vimA- and vimE-Defective Isogenic Mutants of Porphyromonas gingivalis Infect. Immun., March 1, 2005; 73(3): 1357 - 1366. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. Kubota, W. Nishii, M. Kojima, and K. Takahashi Specific Inhibition and Stabilization of Aspergilloglutamic Peptidase by the Propeptide: IDENTIFICATION OF CRITICAL SEQUENCES AND RESIDUES IN THE PROPEPTIDE J. Biol. Chem., January 14, 2005; 280(2): 999 - 1006. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Xu, A. Arulandu, D. K. Struck, S. Swanson, J. C. Sacchettini, and R. Young Disulfide Isomerization After Membrane Release of Its SAR Domain Activates P1 Lysozyme Science, January 7, 2005; 307(5706): 113 - 117. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. Vanterpool, F. Roy, and H. M. Fletcher The vimE Gene Downstream of vimA Is Independently Expressed and Is Involved in Modulating Proteolytic Activity in Porphyromonas gingivalis W83 Infect. Immun., October 1, 2004; 72(10): 5555 - 5564. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. H. Park, S. J. Lee, S. G. Lee, W. S. Lee, and S. M. Byun Hetero- and Autoprocessing of the Extracellular Metalloprotease (Mpr) in Bacillus subtilis J. Bacteriol., October 1, 2004; 186(19): 6457 - 6464. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. A. Golabek, P. Wujek, M. Walus, S. Bieler, C. Soto, K. E. Wisniewski, and E. Kida Maturation of Human Tripeptidyl-peptidase I in Vitro J. Biol. Chem., July 23, 2004; 279(30): 31058 - 31067. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. ten Have, E. Dekkers, J. Kay, L. H. Phylip, and J. A. L. van Kan An aspartic proteinase gene family in the filamentous fungus Botrytis cinerea contains members with novel features Microbiology, July 1, 2004; 150(7): 2475 - 2489. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. G. Diaz, T. Moldoveanu, M. J. Kuiper, R. L. Campbell, and P. L. Davies Insertion Sequence 1 of Muscle-specific Calpain, p94, Acts as an Internal Propeptide J. Biol. Chem., June 25, 2004; 279(26): 27656 - 27666. [Abstract] [Full Text] [PDF] |
||||
![]() |
C.-B. Chen and R. Wallis Two Mechanisms for Mannose-binding Protein Modulation of the Activity of Its Associated Serine Proteases J. Biol. Chem., June 18, 2004; 279(25): 26058 - 26065. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. D. Mikolajczyk, W. J. Catalona, C. L. Evans, H. J. Linton, L. S. Millar, K. M. Marker, D. Katir, A. Amirkhan, and H. G. Rittenhouse Proenzyme Forms of Prostate-Specific Antigen in Serum Improve the Detection of Prostate Cancer Clin. Chem., June 1, 2004; 50(6): 1017 - 1025. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. Toso and R. M. Camire Removal of B-domain Sequences from Factor V Rather than Specific Proteolysis Underlies the Mechanism by Which Cofactor Function Is Realized J. Biol. Chem., May 14, 2004; 279(20): 21643 - 21650. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. A. Borgono, I. P. Michael, and E. P. Diamandis Human Tissue Kallikreins: Physiologic Roles and Applications in Cancer Mol. Cancer Res., May 1, 2004; 2(5): 257 - 280. [Abstract] [Full Text] [PDF] |
||||
![]() |
G. J. Olango, F. Roy, S. M. Sheets, M. K. Young, and H. M. Fletcher Gingipain RgpB Is Excreted as a Proenzyme in the vimA-Defective Mutant Porphyromonas gingivalis FLL92 Infect. Immun., July 1, 2003; 71(7): 3740 - 3747. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. T. Huse, D. Byant, Y. Yang, D. S. Pijak, I. D'Souza, J. J. Lah, V. M.-Y. Lee, R. W. Doms, and D. G. Cook Endoproteolysis of beta -Secretase (beta -Site Amyloid Precursor Protein-cleaving Enzyme) within Its Catalytic Domain. A POTENTIAL MECHANISM FOR REGULATION J. Biol. Chem., May 2, 2003; 278(19): 17141 - 17149. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. A. Golabek, E. Kida, M. Walus, P. Wujek, P. Mehta, and K. E. Wisniewski Biosynthesis, Glycosylation, and Enzymatic Processing in Vivo of Human Tripeptidyl-peptidase I J. Biol. Chem., February 21, 2003; 278(9): 7135 - 7145. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Renatus, H. R. Stennicke, F. L. Scott, R. C. Liddington, and G. S. Salvesen Dimer formation drives the activation of the cell death protease caspase 9 PNAS, December 4, 2001; 98(25): 14250 - 14255. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. Tanaka and R. Y. Yada N-terminal portion acts as an initiator of the inactivation of pepsin at neutral pH Protein Eng. Des. Sel., September 1, 2001; 14(9): 669 - 674. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Bhattacharjya, P. Xu, H. Xiang, M. Chrétien, N. G. Seidah, and F. Ni pH-induced conformational transitions of a molten-globule-like state of the inhibitory prodomain of furin: Implications for zymogen activation Protein Sci., May 1, 2001; 10(5): 934 - 942. [Abstract] [Full Text] |
||||
![]() |
B. Ma, C.-J. Tsai, and R. Nussinov Binding and folding: in search of intramolecular chaperone-like building block fragments Protein Eng. Des. Sel., September 1, 2000; 13(9): 617 - 627. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. D. Mikolajczyk, L. S. Millar, T. J. Wang, H. G. Rittenhouse, L. S. Marks, W. Song, T. M. Wheeler, and K. M. Slawin A Precursor Form of Prostate-specific Antigen Is More Highly Elevated in Prostate Cancer Compared with Benign Transition Zone Prostate Tissue Cancer Res., February 1, 2000; 60(3): 756 - 759. [Abstract] [Full Text] |
||||
![]() |
J. Rodriguez and Y. Lazebnik Caspase-9 and APAF-1 form an active holoenzyme Genes & Dev., December 15, 1999; 13(24): 3179 - 3184. [Abstract] [Full Text] |
||||
![]() |
M. Zhong, J. S. Munzer, A. Basak, S. Benjannet, S. J. Mowla, E. Decroly, M. Chretien, and N. G. Seidah The Prosegments of Furin and PC7 as Potent Inhibitors of Proprotein Convertases. IN VITRO AND EX VIVO ASSESSMENT OF THEIR EFFICACY AND SELECTIVITY J. Biol. Chem., November 26, 1999; 274(48): 33913 - 33920. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Danilkovitch, M. Miller, and E. J. Leonard Interaction of Macrophage-stimulating Protein with Its Receptor. RESIDUES CRITICAL FOR beta CHAIN BINDING AND EVIDENCE FOR INDEPENDENT alpha CHAIN BINDING J. Biol. Chem., October 15, 1999; 274(42): 29937 - 29943. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. R. Khan, N. Khazanovich-Bernstein, E. M. Bergmann, and M. N. G. James Structural aspects of activation pathways of aspartic protease zymogens and viral 3C protease precursors PNAS, September 28, 1999; 96(20): 10968 - 10975. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. V. Matsuka, S. Pillai, S. Gubba, J. M. Musser, and S. B. Olmsted Fibrinogen Cleavage by the Streptococcus pyogenes Extracellular Cysteine Protease and Generation of Antibodies That Inhibit Enzyme Proteolytic Activity Infect. Immun., September 1, 1999; 67(9): 4326 - 4333. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. M. Louis, E. M. Wondrak, A. R. Kimmel, P. T. Wingfield, and N. T. Nashed Proteolytic Processing of HIV-1 Protease Precursor, Kinetics and Mechanism J. Biol. Chem., August 13, 1999; 274(33): 23437 - 23442. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. C. W. Pike, A. M. Brzozowski, S. M. Roberts, O. H. Olsen, and E. Persson Structure of human factor VIIa and its implications for the triggering of blood coagulation PNAS, August 3, 1999; 96(16): 8925 - 8930. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. C. White, M. C. Cordeiro, D. Arnold, P. E. Brodelius, and J. Kay Processing, Activity, and Inhibition of Recombinant Cyprosin, an Aspartic Proteinase from Cardoon (Cynara cardunculus) J. Biol. Chem., June 11, 1999; 274(24): 16685 - 16693. [Abstract] [Full Text] [PDF] |
||||
![]() |
F. Loechel, M. T. Overgaard, C. Oxvig, R. Albrechtsen, and U. M. Wewer Regulation of Human ADAM 12 Protease by the Prodomain. EVIDENCE FOR A FUNCTIONAL CYSTEINE SWITCH J. Biol. Chem., May 7, 1999; 274(19): 13427 - 13433. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Boudreault, D. Gauthier, and C. Lazure Proprotein Convertase PC1/3-related Peptides Are Potent Slow Tight-binding Inhibitors of Murine PC1/3 and Hfurin J. Biol. Chem., November 20, 1998; 273(47): 31574 - 31580. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Nessi, M. J. Jedrzejas, and P. Setlow Structure and Mechanism of Action of the Protease That Degrades Small, Acid-Soluble Spore Proteins during Germination of Spores of Bacillus Species J. Bacteriol., October 1, 1998; 180(19): 5077 - 5084. [Abstract] [Full Text] |
||||
![]() |
B. D. Bennett, S. Babu-Khan, R. Loeloff, J.-C. Louis, E. Curran, M. Citron, and R. Vassar Expression Analysis of BACE2 in Brain and Peripheral Tissues J. Biol. Chem., June 30, 2000; 275(27): 20647 - 20651. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Muller, A. Cameron, Y. Fortenberry, E. V. Apletalina, and I. Lindberg Processing and Sorting of the Prohormone Convertase 2 Propeptide J. Biol. Chem., December 8, 2000; 275(50): 39213 - 39222. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Cameron, J. Appel, R. A. Houghten, and I. Lindberg Polyarginines Are Potent Furin Inhibitors J. Biol. Chem., November 17, 2000; 275(47): 36741 - 36749. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. D. Bennett, P. Denis, M. Haniu, D. B. Teplow, S. Kahn, J.-C. Louis, M. Citron, and R. Vassar A Furin-like Convertase Mediates Propeptide Cleavage of BACE, the Alzheimer's beta -Secretase J. Biol. Chem., November 22, 2000; 275(48): 37712 - 37717. [Abstract] [Full Text] [PDF] |
||||
![]() |
G. A. Hoffman, T. R. Garrison, and H. G. Dohlman Endoproteolytic Processing of Sst2, a Multidomain Regulator of G Protein Signaling in Yeast J. Biol. Chem., November 22, 2000; 275(48): 37533 - 37541. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. H. Phylip, W. E. Lees, B. G. Brownsey, D. Bur, B. M. Dunn, J. R. Winther, A. Gustchina, M. Li, T. Copeland, A. Wlodawer, et al. The Potency and Specificity of the Interaction between the IA3 Inhibitor and Its Target Aspartic Proteinase from Saccharomyces cerevisiae J. Biol. Chem., January 12, 2001; 276(3): 2023 - 2030. [Abstract] [Full Text] [PDF] |
||||
![]() |
X.-P. Shi, E. Chen, K.-C. Yin, S. Na, V. M. Garsky, M.-T. Lai, Y.-M. Li, M. Platchek, R. B. Register, M. K. Sardana, et al. The Pro Domain of beta -Secretase Does Not Confer Strict Zymogen-like Properties but Does Assist Proper Folding of the Protease Domain J. Biol. Chem., March 23, 2001; 276(13): 10366 - 10373. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. D. Boxrud, I. M. A. Verhamme, W. P. Fay, and P. E. Bock Streptokinase Triggers Conformational Activation of Plasminogen through Specific Interactions of the Amino-terminal Sequence and Stabilizes the Active Zymogen Conformation J. Biol. Chem., July 6, 2001; 276(28): 26084 - 26089. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. W. Stawiski, A. E. Baucom, S. C. Lohr, and L. M. Gregoret Predicting protein function from structure: Unique structural features of proteases PNAS, April 11, 2000; 97(8): 3954 - 3958. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Roy, C. I. Bayly, Y. Gareau, V. M. Houtzager, S. Kargman, S. L. C. Keen, K. Rowland, I. M. Seiden, N. A. Thornberry, and D. W. Nicholson Maintenance of caspase-3 proenzyme dormancy by an intrinsic "safety catch" regulatory tripeptide PNAS, May 22, 2001; 98(11): 6132 - 6137. [Abstract] [Full Text] [PDF] |
||||
| HOME | HELP | FEEDBACK | S |