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Protein Science, Vol 7, Issue 6 1396-1403, Copyright © 1998 by Cold Spring Harbor Laboratory Press


ARTICLE

Excluded volume in the configurational distribution of a strongly-denatured protein

A. J. PETRESCU, V. RECEVEUR, P. CALMETTES, D. DURAND and J. C. SMITH
Institute of Biochemistry, 77700 Bucharest 17, Romania Laboratoire Leon Brillouin, CEA-Saclay, 91191 Gif sur Yvette, France

The configurational distribution of phosphoglycerate kinase (PGK) strongly-denatured in 4M guanidine hydrochloride solution is investigated using small-angle neutron scattering (SANS) and Monte Carlo computer simulation. It is shown that the experimental scattering profile can be represented by a random flexible chain of spheres of excess scattering density with excluded volume interactions, the best agreement being achieved when partial sphere intersection is allowed. The radius of gyration of the chain increases by a factor of 4 on denaturation, whereas the average length of segments ~5 residues long increases by only ~10%, consistent with a picture in which the large expansion on denaturation originates primarily from increased long-range flexibility of the polypeptide chain. The results provide a description of the chain statistics from which the construction of starting points for simulation studies of folding of the protein can be envisaged.
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