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Protein Science, Vol 9, Issue 7 1399-1401, Copyright © 2000 by The Protein Society

Decoys 'R' Us: a database of incorrect conformations to improve protein structure prediction [In Process Citation]

R Samudrala and M Levitt
Department of Structural Biology, Stanford University School of Medicine, California 94305, USA. ram@csb.stanford.edu

The development of an energy or scoring function for protein structure prediction is greatly enhanced by testing the function on a set of computer-generated conformations (decoys) to determine whether it can readily distinguish native-like conformations from nonnative ones. We have created "Decoys 'R' Us," a database containing many such sets of conformations, to provide a resource that allows scoring functions to be improved.
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