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1 Department of Crystallography, Birkbeck College, London WC1E 7HX, UK
2 Department of Biochemistry, University of Nijmegen, 6500 HB Nijmegen, The Netherlands
Reprint requests to: Christine Slingsby, Department of Crystallography, Birkbeck College, Malet Street, London WC1E 7HX, UK; e-mail: c.slingsby{at}mail.cryst.bbk.ac.uk; fax: 44-207-631-6803.
(RECEIVED June 17, 2003; FINAL REVISION July 25, 2003; ACCEPTED July 29, 2003)
Article and publication are at http://www.proteinscience.org/cgi/doi/10.1110/ps.03265903.
3 Present address: Astex Technology Ltd., Cambridge Science Park, Cambridge CB4 0QA, UK ![]()
| Abstract |
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-crystallin family assemble into an array of oligomer sizes, forming intricate higher-order networks in the lens cell. Here we describe the 1.4 Å resolution crystal structure of a truncated version of human ßB1 that resembles an in vivo age-related truncation. The structure shows that unlike its close homolog, ßB2-crystallin, the homodimer is not domain swapped, but its domains are paired intramolecularly, as in more distantly related monomeric
-crystallins. However, the four-domain dimer resembles one half of the crystallographic bovine ßB2 tetramer and is similar to the engineered circular permuted rat ßB2. The crystal structure shows that the truncated ßB1 dimer is extremely well suited to form higher-order lattice interactions using its hydrophobic surface patches, linker regions, and sequence extensions. Keywords: ßB1; cataract; crystallin; domain swapping; eye lens; oligomer assembly; protein modification
| Introduction |
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-crystallins and ß
-crystallins, which in turn consist of the monomeric
-crystallin and the oligomeric ß-crystallin branches. The ß-crystallin family comprises four acidic (ßA1, ßA2, ßA3, ßA4) and three basic (ßB1, ßB2, ßB3) polypeptides (Wistow and Piatigorsky 1988), which associate to form homo- and hetero-oligomers in a range of sizes (Slingsby and Bateman 1990).
The tertiary structures of the ß- and
-crystallins are very similar. Both ß- and
-crystallin monomers consist of two similar domains connected by a short linker. Each domain is composed of two similar Greek key motifs of
40 amino acids folded into a wedge-shaped ß-sheet sandwich with approximate twofold symmetry. Based on the crystal structures of ß- and
-crystallins, the main structural difference between the two families was thought to be the intramolecular domain pairing of
-crystallins versus the domain swapped and intermolecular domain pairing of ß-crystallins (Bax et al. 1990). Long N-terminal sequence extensions further distinguish the ß-crystallin family from the
-crystallins, with the basic ß-crystallins also possessing C-terminal extensions (Lubsen et al. 1988). Recent evidence of the involvement of ßB2 extensions in stabilization of higher-order hetero-oligomeric interactions with ßA3 (Werten et al. 1999) indicate that they might play a crucial role in higher oligomer assembly in ways that echo the function of N- and C-terminal extensions in higher oligomer assembly of the small heat shock protein family of which
-crystallin is a member (van Montfort et al. 2001).
The different ß-crystallin polypeptides in adult human and bovine lenses can be separated by gel filtration chromatography in three size fractions: ßH-, ßL1-, and ßL2-crystallins (Zigler Jr. et al. 1980; Bindels et al. 1981). Formation of the 200-kD ßH-crystallin is thought to involve ßB1, which has an N-terminal extension of >50 amino acids (Berbers et al. 1982). The presence of various N-terminally truncated forms of ßB1 in the lower-molecular-weight fractions together with the extensive degradation (1541 residues) of the N-terminal extension of human ßB1 with age as shown by mass spectroscopy (David et al. 1996; Lampi et al. 1998) strengthens the idea that also the N-terminal extension of ßB1 is involved in higher-order assembly (Ajaz et al. 1997).
Because of the proposed function of ßB1 in controlling higher assembly of ß-crystallins and the potential role of truncated versions of the protein in cataract formation (Hanson et al. 2000), we set out to solve the structure of human ßB1 (hßB1) and use it as a first step to gain further insight in the intermolecular relationships of the ß-crystallins and their higher oligomer assemblies. Despite extensive crystallization trials, crystallization of full-length human ßB1 was unsuccessful. Therefore, crystallization experiments were carried out with various truncated forms of the protein. Here we describe the 1.4 Å crystal structure of a truncated human ßB1 (trhßB1) that lacks more than the first 41 N-terminal residues (Bateman et al. 2001) and resembles truncations occurring in the aging human eye lens (Ma et al. 1998).
| Overall structure |
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B sequence, see Fig. 2
-crystallin domains, which are connected by a short linker. With the crystal structure of bovine ßB2 in mind and the observation that both ßB2 and truncated hßB1 form dimers in solution (Bateman et al. 2001), the arrangement of the domains in trhßB1 was expected to be similar to the domain-swapped bovine ßB2 (Fig. 1d
-crystallin and the respective linkers have a similar conformation (Fig. 1a,c
B and the 1.4 Å trhßB1 structure could be superimposed with a root mean square deviation (rmsd) of 1.41 Å using 171 C
-coordinates. In addition to the similarity in domain pairing with the
-crystallins, the trhßB1 dimer closely resembles the top half of the crystallographic tetramer of bovine ßB2 (rmsd 1.20 Å using 346 C
-coordinates; Fig. 1e
-coordinates; Fig. 1b
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| Domain interactions |
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-crystallins, and circularly permuted "swapped back" cpßB2 show the versatility of the ß
system for domain assembly (Fig. 1
-crystallin monomer to play a crucial role. Yet, neither its length nor its sequence appears to be important, as the
B and ßB2 linkers have the same length (Fig. 2
B remained monomeric after exchange of its linker with that of ßB2 (Mayr et al. 1994).
In addition, a structural comparison of trhßB1, cpßB2, bovine ßB2, and
B showed that the differences in their inter- and intramolecular interfaces are small. Compared with bovine ßB2, the only extra interaction in the intermolecular QR interface in circular permutated ßB2 (Fig. 3B,C
) is an intermolecular interaction between Arg171 and Asp107 (Wright et al. 1998). A similar interaction is present between the corresponding Arg232 and Asp168 in trhßB1 (Fig. 3A
). In the monomeric
-crystallins, the equivalent of Arg171/Arg232 is always hydrophobic, and thus, the formation of an intermolecular salt-bridge is impossible. This indicates that the salt-bridge may play a role in the dimer formation of intramolecularly domain-paired crystallins, but its absence in the bovine ßB2 tetramer shows that it is not essential in the domain-swapped crystallin. Instead, Arg171 in ßB2 forms an intramolecular salt-bridge with Asp108. In trhßB1, cpßB2, and
B, this aspartic acid (Asp169 in trhßB1 and Asp108 in cpßB2 and
B) interacts with a strictly conserved arginine residue (Arg230 in trhßB1 and Arg169 in cpßB2 and
B). In the structures of these three proteins, the arginine side chain adopts a similar conformation, but in ßB2, it reaches out across the PQ interface. The conformation of this arginine coupled with its interaction with Asp108/Asp169 thus appears to correlate with intramolecular domain pairing in the ß
-crystallin family.
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| Results and Discussion |
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Because the ß-crystallin proteins are extremely long-lived as the mature eye lens fiber cell does not have the machinery for macromolecular synthesis or degradation, age-related truncation of ß-crystallins could affect the higher-order assembly as well as the solubility and stability of the different ß-crystallins, which may ultimately result in cataract formation. Indeed, truncation of hßB1 is correlated with its presence in the lower-molecular-weight ßL-crystallins (Ajaz et al. 1997) and extensive age-related ßB1 truncations of up to 40 N-terminal residues have been observed in the soluble lens crystallin fraction of normal human lenses (David et al. 1996; Ma et al. 1998). Even more extensive truncations of up to 73 N-terminal residues were found in the insoluble lens crystallin fraction of 50- to 65-year-old human lenses (Hanson et al. 2000). Nevertheless, truncation of up to 47 residues from the N terminus and five residues from the C terminus did not affect in vitro stability (Kim et al. 2002). This is consistent with the trhßB1 structure as the bulk of the N-terminal extension is clearly not necessary to stabilize the dimeric form. However, truncations reaching into the N-terminal domain would be predicted to cause unfolding and loss of solubility.
Unfortunately, the structure of full-length hßB1 in the context of higher assemblies of ßH-crystallin is unknown, although NMR-experiments on hßB1 self-assemblies indicate that most of its N-terminal extension is flexible and has no ordered structure (Lampi et al. 2002). However, in addition to an unexpected domain-pairing, the crystal structure of trhßB1 shows that N-terminal residues close to the globular domains are well suited to form an intricate branched-out hetero-oligomeric network.
| Materials and methods |
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| Acknowledgments |
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The publication costs of this article were defrayed in part by payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 USC section 1734 solely to indicate this fact.
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