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Protein Science (2003), 12:997-1006.
Copyright © 2003 The Protein Society

Arresting and releasing Staphylococcal {alpha}-hemolysin at intermediate stages of pore formation by engineered disulfide bonds

Toshimitsu Kawate1 and Eric Gouaux1,2

1 Department of Biochemistry and Molecular Biophysics and
2 Howard Hughes Medical Institute, Columbia University, New York, New York 10032, USA

Reprint requests to: Eric Gouaux, Department of Biochemistry and Molecular Biophysics, Columbia University, 650 West 168th Street, New York, NY 10032, USA; e-mail: jeg52{at}columbia.edu; fax: (212) 305-8174.

(RECEIVED September 9, 2002; FINAL REVISION January 24, 2003; ACCEPTED January 27, 2003)

Article and publication are at http://www.proteinscience.org/cgi/doi/10.1110/ps.0231203.


    Abstract
 TOP
 Abstract
 Introduction
 Results
 Discussion
 Materials and methods
 References
 
{alpha}-Hemolysin ({alpha}HL) is secreted by Staphylococcus aureus as a water-soluble monomer that assembles into a heptamer to form a transmembrane pore on a target membrane. The crystal structures of the LukF water-soluble monomer and the membrane-bound {alpha}-hemolysin heptamer show that large conformational changes occur during assembly. However, the mechanism of assembly and pore formation is still unclear, primarily because of the difficulty in obtaining structural information on assembly intermediates. Our goal is to use disulfide bonds to selectively arrest and release {alpha}HL from intermediate stages of the assembly process and to use these mutants to test mechanistic hypotheses. To accomplish this, we created four double cysteine mutants, D108C/K154C ({alpha}HL-A), M113C/K147C ({alpha}HL-B), H48C/ N121C ({alpha}HL-C), I5C/G130C ({alpha}HL-D), in which disulfide bonds may form between the pre-stem domain and the ß-sandwich domain to prevent pre-stem rearrangement and membrane insertion. Among the four mutants, {alpha}HL-A is remarkably stable, is produced at a level at least 10-fold greater than that of the wild-type protein, is monomeric in aqueous solution, and has hemolytic activity that can be regulated by the presence or absence of reducing agents. Cross-linking analysis showed that {alpha}HL-A assembles on a membrane into an oligomer, which is likely to be a heptamer, in the absence of a reducing agent, suggesting that oxidized {alpha}HL-A is halted at a heptameric prepore state. Therefore, conformational rearrangements at positions 108 and 154 are critical for the completion of {alpha}HL assembly but are not essential for membrane binding or for formation of an oligomeric prepore intermediate.

Keywords: Double cysteine mutants; disulfide bonds; assembly intermediate; pore-forming toxin; Staphylococcal {alpha}-hemolysin

Abbreviations: {alpha}HL, {alpha}-Hemolysin • Luk, leukocidin • {gamma}HL, {gamma}-hemolysin • SEC, size-exclusion chromatography • ßME, ß-mercaptoethanol • DTT, dithiothreitol • DiC8PC, dioctanoyl phosphatidyl choline • GA, glutaraldehyde • WT-His6, wild-type {alpha}-hemolysin with a carboxyl terminal hexa-histidine tag • RBC, rabbit blood cells • SDS-PAGE, SDS polyacrylamide gel electrophoresis


    Introduction
 TOP
 Abstract
 Introduction
 Results
 Discussion
 Materials and methods
 References
 
The molecular mechanisms of oligomeric membrane protein assembly and insertion are poorly understood to a great extent because of the difficulty in obtaining structural information on assembly intermediates. In many cases, the assembly and insertion of oligomeric membrane proteins involve complex pathways in which multiple accessory proteins, such as chaperones, play essential roles and complicate the elucidation of molecular mechanisms (Booth et al. 2001). However, because of its spontaneous and relatively simple assembly pathway, {alpha}-hemolysin ({alpha}HL) is an ideal molecule to study to determine mechanisms of membrane protein assembly and insertion (Heuck et al. 2001; Prevost et al. 2001; Montoya and Gouaux 2003).

{alpha}HL is a lytic cytotoxin secreted by Staphylococcus aureus, a common and potentially deadly human pathogen (Menestrina et al. 2001). {alpha}HL is related in amino acid sequence and biological function to a host of other pore-forming Staphylococcal toxins that include a family of bicomponent toxins requiring two subunits for assembly and function (Gouaux et al. 1997). The bicomponent toxins are {gamma}-hemolysin ({gamma}HL), leukocidin (Luk), and Panton-Valentine leukocidin (PVL), and are composed of the subunits LukF + H{gamma}II, LukF + LukS, and PV-LukF + PV-LukS, respectively (Tomita and Kamio 1997). In addition to being similar to {alpha}HL in terms of function and amino acid sequence, LukF, LukS, and H{gamma}II are related in three-dimensional structure (Gouaux et al. 1997; Gouaux 1998). All of these Staphylococcal toxins are secreted as water-soluble monomers, and assemble on target cell membranes to form oligomeric membrane pores. {alpha}HL is a homoheptamer and assembles on erythrocyte and egg phosphatidylcholine membranes, and in deoxycholate micelles (Bhakdi et al. 1981; Gouaux et al. 1994; Song et al. 1996; Fang et al. 1997; Malghani et al. 1999; Krasilnikov et al. 2000). Under some conditions, however, Shao and colleagues contend that a hexamer may also be formed, as determined by atomic force microscopy (Czajkowsky et al. 1998). At the present time, evidence for the subunit stoichiometry of the bicomponent heteromeric Luk pores suggests that they are either heptameric (Sugawara-Tomita et al. 2002) or octameric (Miles et al. 2002).

A number of different probes have been employed to elucidate the mechanism of toxin assembly for the heptameric {alpha}HL pore, including (1) proteolytic susceptibility (Palmer et al. 1993; Walker et al. 1995), (2) site-directed mutagenesis (e.g., Walker and Bayley 1995a), and (3) fluorescence spectroscopy (Valeva et al. 1997a, b; Vécsey-Semjén et al. 1997). The most parsimonious mechanism for {alpha}HL assembly is shown below.



Structural studies of the water-soluble monomer ({alpha}1) and the heptameric pore ({alpha}7) have shown that there are significant conformational changes between {alpha}1 and {alpha}7 (Olson et al. 1999; Pédelacq et al. 1999, 2000). In {alpha}1, the amino latch and the pre-stem domain are located adjacent to the ß-sandwich domain and participate in intraprotomer interactions (Walker et al. 1992; Walker and Bayley 1995a; Valeva et al. 1997b). In {alpha}7, however, the amino latch is directed toward the lumen of the pore, and makes a number of significant contacts with residues on a neighboring protomer (Song et al. 1996). The pre-stem domain has also rearranged in {alpha}7 and now forms a transmembrane ß-barrel, called the stem domain. Although the atomic structure for the end point on the assembly pathway has been solved (Song et al. 1996), and a number of key residues that play essential roles in the assembly process have been found, determination of molecular mechanisms for the assembly of the heptamer and for the formation and insertion of the transmembrane ß-barrel have proven elusive.

To elaborate a detailed mechanism for the assembly of {alpha}HL, we must have structural information on assembly intermediates. However, because the intermediates are inherently short-lived, one must find methods to arrest the toxin at specific points along the assembly pathway. Although a number of toxin variants have been produced that are arrested at intermediate stages of assembly (Walker and Bayley 1995b; Walker et al. 1995; Valeva et al. 2001), variants that can be turned on and off with a switch that is as stereospecific as a disulfide bond are particularly attractive for mechanistic studies (Harrison and Sternberg 1996). In this study, we created double cysteine mutants of {alpha}HL that are predicted to form disulfide bonds between the ß-sandwich domain and the pre-stem domain. When the cysteine residues form a disulfide bond, the pre-stem will be prevented from rearranging, and the toxin should be inactive. In the presence of a reducing agent, however, the disulfide bond will be reduced, the pre-stem will be able to rearrange, and the toxin should have hemolytic activity. Depending on where the disulfide bond is located, we can halt specific conformational rearrangements. Here, we describe the functional behavior of a panel of four double cysteine mutants, show that rearrangement of the pre-stem is essential for lytic activity and for formation of the SDS-stable heptamer, and demonstrate that formation of the oligomeric prepore intermediate precedes and is not dependent upon rearrangement of the pre-stem.


    Results
 TOP
 Abstract
 Introduction
 Results
 Discussion
 Materials and methods
 References
 
Design of the double cysteine mutants
We created four double cysteine mutants that could form disulfide bonds between the pre-stem domain and the ß-sandwich domain. The design of three of the mutants was based on the crystal structure of the LukF water-soluble monomer (Olson et al. 1999) where mutation sites were selected on the basis of (1) C{alpha}–C{alpha} distances between the pre-stem domain and the ß-sandwich domain of ~5 Å in the monomeric state, (2) appropriate orientation of the C{alpha}–Cß bond vectors (Harrison and Sternberg 1996) in the monomeric state, and (3) an increase in the C{alpha}–C{alpha} separation of the selected residues by more than 10 Å upon heptamer formation. The resulting mutants were {alpha}HL-A (D108C/K154C), {alpha}HL-B (M113C/K147C), and {alpha}HL-C (H48C/N121C), and the locations of the sites are illustrated in Figure 1Go. In addition, we made a fourth mutant, {alpha}HL-D (I5C/G130C), because Valeva and colleagues have shown that introduction of cysteine residues at these positions results in disulfide bond formation between the N-terminus and the ß-sandwich domain, thereby preventing pore formation and cell lysis (Valeva et al. 2001).



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Figure 1. Structures of a homology model of the water-soluble {alpha}HL monomer and a protomer from the assembled heptamer. (A) Location of the double cysteine mutation sites in {alpha}HL. The model of water-soluble {alpha}HL monomer was created using Swiss-Model program (Peitsch and Tschopp 1995; Peitsch 1996; Guex and Peitsch 1997) based on the structure of water-soluble LukF monomer. Because the amino terminus of {alpha}HL is not homologous to that of LukF, the first 16 residues are not shown. Three putative disulfide bridges in the mutants {alpha}HL-A (D108C/K154C), {alpha}HL-B (M113C/K147C), and {alpha}HL-C (H48C/N121C) are depicted for illustration purposes only. For mutant {alpha}HL-D (I5C/G130C), the locations of Gly130 and the amino terminus of this model (Asn17) are illustrated. In parts (A) and (B) of this figure, the pre-stem is in green, the ß-sandwich is in blue, the rim is in red, and the triangle region is in yellow. (B) A schematic presentation of the {alpha}HL conformational change during pore formation. The water-soluble monomer was modeled as indicated in (A). A protomer of the heptameric pore is depicted on the right-hand side of the panel. Here, the amino-latch is in pink.

 
Purification of the double cysteine mutants
The double cysteine mutations were generated by PCR using pT7[{alpha}HL-His6] as a template. The resulting mutant proteins were expressed in the cytoplasm of Escherichia coli cells (Prinz et al. 1997) and purified to homogeneity by affinity chromatography, as shown in Figure 2Go. The molecular masses were confirmed by mass spectrometry (calculated and predicted masses were, respectively: A, 34.832 and 34.847 kD; B, 34.816 and 34.839 kD; C, 34.824 and 34.845 kD; D, 34.905 and 34.931 kD). As illustrated in Figure 2Go, in the absence of a reducing agent, {alpha}HL-A, {alpha}HL-C and a fraction of {alpha}HL-D migrated faster than WT-His6, implying that disulfide bonds might have formed, resulting in a more compact protein that migrates faster on the gel. In the presence of a reducing agent, by contrast, the mutants and the wild-type protein comigrated. The mobility of {alpha}HL-B relative to the WT protein did not change in the presence or absence of a reducing agent.



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Figure 2. SDS-PAGE of purified mutant proteins in the presence and absence of a reducing agent. Recombinant proteins were purified by Ni-NTA chromatography, and 4 µg of each protein was analyzed +/- ß-mercaptoethanol. The lanes are composed of wild-type, untagged {alpha}HL (WT), wild-type His-tagged {alpha}HL, and mutants {alpha}HL-A (A), {alpha}HL-B (B), {alpha}HL-C (C), and {alpha}HL-D (D).

 
To determine whether the cysteine residues resulted in intermolecular disulfide bond formation or in higher order aggregation, the Ni-NTA-purified proteins were subject to size-exclusion chromatography (SEC). All four mutants eluted at 16 mL from a Superose 12 10/30 column run in the absence of a reducing agent (data not shown). Comparison of the elution position of the mutants to standard proteins suggests that the molecular weight of the mutants is ~35 kD. The mutants also coeluted with the wild-type, cysteine-free protein. The mutants are, therefore, monomeric in aqueous solution under oxidizing conditions.

Hemolytic assays of the mutant and wild-type proteins
If the mutant proteins form disulfide bonds and become trapped at an intermediate stage of assembly, they will not have hemolytic activity in the absence of a reducing agent but will have hemolytic activity in the presence of a reducing agent. To test for hemolytic activity, the mutant proteins were incubated with rabbit blood cells (RBC), with and without a reducing agent, and the increase of supernatant absorbance at 475 nm due to released hemoglobin was followed (Fig. 3Go). In the absence of a reducing agent, {alpha}HL-A showed background hemolytic activity that was the same as that of buffer only (10%), suggesting that {alpha}HL-A forms a disulfide bond and does not assemble to a lytic pore. The relatively low hemolytic activity of {alpha}HL-C (25%) also indicates that a large proportion of {alpha}HL-C may form disulfide bonds, thus blocking pore formation. For {alpha}HL-A and {alpha}HL-C, a reducing agent rescued their hemolytic activity to levels close to that of WT-His6 (95%–100%), suggesting that the introduced cysteine residues do not substantially disrupt their structures.



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Figure 3. Hemolytic activity of mutant proteins, defined as in Figure 2Go, under reducing and nonreducing conditions. RBC in hemolysis (HL) buffer were incubated with wild-type and mutant proteins at 20°C for 20 min. The hemolytic activity was monitored by following the increase of absorbance at 475 nm. The reactions were normalized to the extent of lysis caused by diluting an equivalent volume of erythrocytes into 8 volumes of Milli Q water. The reported value is the mean and the error bars define standard deviations (n = 3). The symbol "b" indicates buffer, the symbol "WT" indicates His-tagged wild-type protein, and the symbol "+/-" indicates +/- DTT.

 
Although {alpha}HL-D also showed a high hemolytic activity in the presence of a reducing agent (85%), it also showed substantial activity (60%) in the absence of a reducing agent, suggesting that only a portion of the {alpha}HL-D mutant protein forms a disulfide bond. In contrast to the other mutants, {alpha}HL-B showed similar hemolytic activities in the presence or absence of a reducing agent (70%), indicating that {alpha}HL-B probably does not readily form a disulfide bond. Because {alpha}HL-A showed the most distinct hemolytic behavior in the presence and absence of a reducing agent, and because the protein expression level of {alpha}HL-A was at least 10-fold greater than any of the other proteins, including the wild-type toxin, we decided to concentrate our studies on {alpha}HL-A.

Time course of hemolysis and binding assay of {alpha}HL-A
To further explore the hemolytic potency of {alpha}HL-A, a hemolytic assay was carried out with the time course over the first 10 min. Although {alpha}HL-A did not have hemolytic activity in the absence of a reducing agent, {alpha}HL-A showed an equivalent hemolytic curve to that of the wild-type protein in the presence of a reducing agent (Fig. 4AGo). These data strongly suggest that {alpha}HL-A retains wild-type structure under reducing conditions, resulting in essentially the same hemolytic potency as the wild-type protein. However, {alpha}HL-A might have a lower hemolytic activity but a higher affinity to rabbit blood cells (RBC), compared to that of the wild-type protein. If this were the case, {alpha}HL-A might then show hemolytic activity similar to that of the wild-type protein. Therefore, we examined the binding of {alpha}HL-A to RBC. After incubation of the wild-type toxin and {alpha}HL-A with RBC on ice, a condition in which {alpha}HL does not assemble but does bind to RBC (Hildebrand et al. 1991), the supernatant and pellet fractions were analyzed by Western blotting. As shown in Figure 4BGo, there was no substantial difference between {alpha}HL-A and wild-type toxin in binding to RBC. Moreover, {alpha}HL-A binds to RBC to the same extent in the presence or absence of a reducing agent.



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Figure 4. Lysis and binding experiments using wild-type toxin and {alpha}HL-A. (A) Time course hemolytic activity of {alpha}HL-A. RBC in hemolysis (HL) buffer were incubated with wild-type and {alpha}HL-A protein either in the absence (left) or presence (right) of DTT at 20°C for 0, 2, 4, 6, 8, and 10 min. The hemolytic activity was monitored by following the increase of absorbance at 475 nm. The reactions were normalized to the extent of lysis caused by diluting an equivalent volume of erythrocytes into 8 volumes of Milli Q water. The reported value is the mean, and the error bars define one standard deviation (n = 3). (B) {alpha}HL-A binding to RBC. The recombinant proteins were incubated with RBC in the presence or absence of DTT on ice for 1 h. The supernatant and pellet fractions were separated by centrifugation, and the amount of recombinant protein was detected by Western blotting using anti-His6 antibody. The symbol "S" indicates supernatant and the symbol "P" indicates pellet.

 
{alpha}HL-A forms a disulfide bond
To show that {alpha}HL-A forms a disulfide bond, a limited trypsin digestion assay was performed. Because there are two major trypsin cleavage sites in {alpha}HL (Fig. 5AGo), when the wild-type monomeric toxin is treated with a low concentration of trypsin, the resulting digestion yields four major bands including uncut material (35 kD) and three smaller fragments of 34.2, 20.5, and 13.7 kD. One cleavage site is near the amino terminus at Lys 8, and the second site is located in the middle of the sequence at Lys 131. Therefore, if {alpha}HL-A forms a disulfide bond between the residues C108 and C154 as we predict, the 20.5-kD fragment and the 13.7-kD fragment will remain linked together in the absence of a reducing agent. As shown in Figure 5BGo, neither the 20.5-kD nor the 13.7-kD fragments are seen under conditions that maintain the integrity of a disulfide bond (lanes 3–6). Digestion is occurring because we see the appearance of the 34.2-kD fragment, as well as a slightly larger ~36-kD fragment as the trypsin concentration increases (lanes 4–6). The approximate yield of these fragments at the highest trypsin concentration (trypsin/protein ratio of 1/50) were ~30% (34.2 kD) and ~20% (~36 kD), respectively. The ~36-kD band may represent a species that is cleaved at Lys 131 but remains intact and has a less compact structure compared to the uncut protein. In the presence of a reducing agent, both the 20.5- and the 13.7-kD bands are produced (lanes 8–11) and the ~36-kD band is not seen. These results suggest that there is a disulfide bond between residues C108 and C154 in {alpha}HL-A, and that this bond covalently links the amino and carboxyl terminal fragments following cleavage at Lys 131 by trypsin. All fragment sizes were confirmed by mass spectrometry (data not shown).



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Figure 5. SDS-PAGE of trypsin-digested {alpha}HL-A protein under reducing and nonreducing conditions. (A) The two most sensitive trypsin digestion sites (K8 and K131) in {alpha}HL-A are shown. (B) The digestion mixtures were analyzed in the absence of ß-mercaptoethanol (lanes 2–6) or in the presence of ß-mercaptoethanol (lanes 7–11). Lanes 2–6 and 7–11 are digestion mixtures with trypsin/protein ratios of 0, 1/5000, 1/500, 1/250, 1/50 (w/w), respectively.

 
{alpha}HL-A forms an oligomer in the presence of lipid-like micelles
We have shown that {alpha}HL-A does not have hemolytic activity under oxidizing conditions but is hemolytic under reducing conditions. To test whether {alpha}HL-A is trapped as a monomer or oligomer in the absence of a reducing agent but in the presence of lipids, the mutant protein was incubated with DiC8PC micelles and analyzed by SDS-PAGE (Fig. 6Go). Like deoxycholate (Bhakdi et al. 1981), DiC8PC micelles readily promote the assembly of {alpha}HL (Southall 1997). In the presence of a reducing agent, {alpha}HL-A oligomerized like WT-His6 (Fig. 6Go, right side of gel). Because the oligomer band size of {alpha}HL-A comigrates with the WT-His6 oligomer band, we assert that {alpha}HL-A forms a heptamer. However, in the absence of a reducing agent but in the presence of DiC8PC, there is no oligomer band for {alpha}HL-A lane (Fig. 6Go, left side of gel). These results indicate that {alpha}HL-A does not assemble to form a SDS-stable oligomer in the absence of a reducing agent. Nevertheless, {alpha}HL-A may assemble on a membrane but the assembled oligomer may be SDS-sensitive.



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Figure 6. Wild-type and {alpha}HL-A toxin assembly in the absence or presence of ß-mercaptoethanol. The recombinant proteins (0.5 mg/mL) were incubated with 8 mM DiC8PC at room temperature for 1 h. Oligomerization was detected by SDS-PAGE +/- 0.7 M ß-mercaptoethanol. The positions of molecular weight standards are shown on the left, and the numbers are in units of kD. The symbol "WT" indicates His-tagged wild-type protein.

 
To determine whether {alpha}HL-A assembles into a SDS-sensitive oligomer on a membrane without a reducing agent, {alpha}HL-A was crosslinked using glutaraldehyde (Peters and Richards 1977) and analyzed by SDS-PAGE. When {alpha}HL-A was incubated with the cross-linker in the absence of DiC8PC, there was no band corresponding to the {alpha}HL-A oligomer, with or without the cross-linker. In the presence of a reducing agent and DiC8PC, {alpha}HL-A formed an oligomer and the assembly was not dependent upon the presence of a cross-linker (Fig. 7Go B, lanes 8–11 and 13–15), which is consistent with our previous results as shown in Figure 6Go. In the absence of a reducing agent, however, the detection of an assembled {alpha}HL-A oligomer was dependent upon the presence of the cross-linker (Fig. 7AGo, lanes 8–11, 13–16). These results suggest that {alpha}HL-A assembles into a SDS-sensitive oligomer on a membrane, even in the absence of a reducing agent. Upon assembly under reducing conditions, there are two major bands on the gel at high molecular weight (Fig. 7Go, lanes 8–11 and 13–15), which may correspond to either the same stoichiometry of oligomer trapped in two conformational states or to oligomers of different subunit stoichiometry.



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Figure 7. SDS-PAGE of crosslinked {alpha}HL-A mutant oligomer under reducing and nonreducing conditions. {alpha}HL-A protein (1.3 mg/mL) was incubated with 8 mM DiC8PC (lanes 8–17) or without DiC8PC (lanes 3–7) at room temperature for 1 h with DTT (B) or without DTT (A). The resulting reaction mixtures were incubated with glutaraldehyde (GA) at room temperature either for 1 h (lanes 8–12) or 24 h (lanes 3–7, 13–17). Five different GA concentrations (0, 0.25, 0.5, 2.5, and 25 µM) were used for each set of lanes 3–7, 8–12, and 13–17, respectively. The triangle depicts the increase in GA concentrations.

 

    Discussion
 TOP
 Abstract
 Introduction
 Results
 Discussion
 Materials and methods
 References
 
Structural information on assembly intermediates of transmembrane pore complexes have proven difficult to obtain. A promising approach to isolate and stabilize assembly intermediates involves the introduction of specific disulfide bonds between portions of the structure that undergo dramatic rearrangement during the transformation from the water-soluble to the membrane-bound species (Falke and Koshland 1987; Matsumura and Matthews 1989; Rossjohn et al. 1998; Hotze et al. 2001). In the present study, we created and screened four double cysteine mutants for the purpose of isolating {alpha}HL assembly intermediates. The idea was to find double cysteine mutants that formed a stable disulfide bond between the ß-sandwich and the pre-stem domains, and prevented assembly and membrane insertion under oxidizing conditions while allowing wild-type like assembly and pore formation under reducing conditions. Because disulfide bonds have specific stereochemical requirements (Harrison and Sternberg 1996), we investigated the behavior of a number of mutants in an effort to select the one(s) that possessed the most favorable properties.

Among the four mutant proteins, we focused our research on {alpha}HL-A because it is inactive under oxidizing conditions and fully active under reducing conditions. The mutation sites in {alpha}HL-A are located between the ß-sandwich domain and the neck of the pre-stem domain in the {alpha}1 form (Fig. 1AGo). The pre-stem domain is probably quite flexible in the water-soluble state, not only because it contains numerous glycine residues and is protease sensitive, but also because it undergoes a dramatic rearrangement in the transition from {alpha}1 to {alpha}7. Because {alpha}HL-A has wild-type hemolytic potency in the presence of a reducing agent, the loss of hemolytic activity does not result from the disulfide bond simply disrupting the native structure in a nonspecific manner. Therefore, we conclude that the disulfide bond in {alpha}HL-A specifically connects the ß-sandwich domain and the pre-stem domain, restraining the pre-stem and preventing assembly (Fig. 8Go).



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Figure 8. A schematic showing the arrest and the release of {alpha}HL-A. Water-soluble {alpha}HL-A monomer ({alpha}1) binds to a target membrane through the rim-domain ({alpha}1*) followed by prepore formation ({alpha}7*). {alpha}HL-A is arrested from forming a pore at this stage by the disulfide bond formed between the ß-sandwich domain and the rim domain under oxidizing conditions. Under reducing conditions, however, the disulfide bridge between residues 108 and 154 is reduced, the pre-stem can rearrange, and {alpha}HL-A forms a heptameric pore ({alpha}7). In this schematic, only four protomers are depicted in the heptameric prepore ({alpha}7*) and the heptameric pore ({alpha}7) states.

 
The next question to address concerns the stage at which the assembly of {alpha}HL-A is arrested. The oligomerization assay showed that there was no oligomer band seen in the {alpha}HL-A lane in the absence of a reducing agent, indicating that either {alpha}HL-A does not form an oligomer or {alpha}HL-A forms an oligomer that is SDS-sensitive. To differentiate between these two possibilities, we cross-linked {alpha}HL-A with glutaraldehyde in the presence of DiC8PC micelles, conditions that allow for the assembly of the wild-type toxin (Southall 1997). As shown in Figure 7Go, oligomer bands were seen in the absence of a reducing agent but in the presence of a cross-linker, suggesting that {alpha}HL-A forms an oligomer on the membrane-like micelles (Fig. 7AGo; lanes 10–12, 15, and 16). When {alpha}HL-A was incubated with DiC8PC in the presence of a reducing agent, two major oligomer bands were seen in the presence or absence of a cross-linker (Fig. 7BGo; lanes 8–11, 13–15). These two different migration patterns may represent different conformational states, that is, the heptameric transmembrane pore and the heptameric prepore, or they may represent different oligomerization states, that is, heptamer versus octamer, for example. In the case of the I5C/G130C double mutant, Bhakdi and colleagues also found that under oxidizing conditions the oligomer migrated more slowly than under reducing conditions (Valeva et al. 2001). In the absence of a reducing agent, on the other hand, there was only one major oligomer band, which corresponds to the slower moving band, suggesting that {alpha}HL-A does not form a membrane pore but does form an oligomeric prepore. Therefore, our results support the idea that oligomerization precedes pore formation, and that {alpha}HL-A is arrested at the heptameric prepore ({alpha}7*) stage of membrane pore formation.

Efforts to conclusively determine whether {alpha}HL-A forms a heptamer in the absence of reducing agents but in the presence of a cross-linker have not been definitive. We attempted to obtain the molecular weight of the cross-linked species by mass spectrometry, but have not been able to observe species of such high molecular weight in the spectrometer. Estimation of the size of the complex in DiC8PC micelles by SEC has also been inconclusive. Indeed, determining the molecular mass of oligomeric membrane proteins that are in the 200–300-kD range is challenging, particularly for species that have been subject to chemical cross-linking. Nevertheless, one important observation that strongly indicates a specific complex is being cross-linked is that the cross-linking gels show primarily a single major band of mass corresponding approximately to a heptamer. The gels do not show a ladder of bands that would indicate the successive cross-linking of the monomer, dimer, trimer, etc. One would expect to see such a ladder of bands if the {alpha}HL-A protein were monomeric and simply forming transient, nonspecific contacts with other toxin molecules on the surface of the DiC8PC micelles.

In conclusion, we created and screened four double cysteine mutants to isolate an assembly intermediate of {alpha}HL. The {alpha}HL-A mutant is remarkably stable, and is expressed at a level at least 10-fold greater than that of the wild-type protein. The hemolytic and trypsin digestion analysis showed that {alpha}HL-A forms a disulfide bond between C108 and C154, and this disulfide bond prevents the toxin from forming a transmembrane pore. Furthermore, the cross-linking analysis showed that {alpha}HL-A assembles on a membrane into an oligomer, which is likely a heptamer, in the absence of a reducing agent, suggesting that {alpha}HL-A is halted at a heptameric prepore ({alpha}7*) state. Therefore, conformational rearrangements at positions 108 and 154 are critical to the completion of the assembly of {alpha}HL but are not essential for membrane binding or for formation of an oligomeric prepore intermediate.


    Materials and methods
 TOP
 Abstract
 Introduction
 Results
 Discussion
 Materials and methods
 References
 
Primers
All primers used for the site-directed mutagenesis were purchased from Operon and purified by HPLC. They are A1F ({alpha}HL-A 1st mutation forward), CCAAGAAATTCGATTTGCACAAAAGAG; A1R ({alpha}HL-A first mutation reverse), CTCTTTTGTGCAAATCG AATTTCTTGG; A2F, CTGATTTCTGCACAATTTTAGAGAG CCC; A2R, GGCTCTCTAAAATTGTGCAGAAATCAGG; B1F, GATACAAAAGAGTATTGCAGTACTTTAACTTATGG; B1R, CCATAAGTTAAAGTA CTGCAATACTCTTTTGTATC; B2F, GGTCATACACTGTGCTATGTTCAACCTG; B2R, CAGGTT GAACATAGCACAGTGTATGACC; C1F, CGATGATAAAA ATTGCAATAAAAAACTGC; C1 R, GC AGTTTTTTATTG CAATTTTTATCATCG; C2F, CTTATGGATTCTGCGGTAAT GTTACTGGTG; C2R, CACCAGTAACATTACCGCAGAATC CATAAG; D1F, GGCAGATTCTGATTGCAATATTAAAAC CGG; D1R, CCGGTTTTAATATTGCAATCAGAATCTGCC; D2F, CTGGTGATGATACATGCAAAATTGGCGGCC; D2R, GGCCGCCAATTTTGCATGTATCATCACCAG.

Mutant DNA construction
All four double-cysteine mutants were made by Quickchange Site-Directed Mutagenesis (Stratagene). The first PCR was carried out for 18 cycles (95°C/30 sec, 50°C/1 min, 68°C/10 min) with 10 ng of pT7[{alpha}HL-His6] (His-tagged, wild-type {alpha}HL; generously provided by Hagan Bayley) as the template, 125 ng of primers (A1F/A1R, B1F/B1R, C1F/C1R, D1F/D1R), 1 µL of dNTPs (25 mM), 5 µL of 10x buffer, 40 µL of H2O, and 1 µL of PFU polymerase. The resulting single-cysteine mutants were confirmed by DNA sequencing through the whole {alpha}HL coding region and used as the template for the second PCR. The second PCR was carried out with the second sets of primers (A2F/A2R, B2F/B2R, C2F/C2R, D2F/D2R) for 18 cycles of 95°C/30 sec, 52°C/1 min, and 68°C/10 min. The entire {alpha}HL coding region of each double-cysteine mutant was confirmed by DNA sequencing.

Mutant protein purification
Mutant plasmids and pT7[{alpha}HL-His6] were separately transformed into Origami cells (Novagen; Prinz et al. 1997) and cultured at 37°C for 16–18 h in 40 mL of Luria-Bertani (LB) media containing 15 µg/mL of kanamycin, 50 µg/mL of ampicillin, and 12.5 µg/mL of tetracycline (LB KAT). Two liters of LB KAT were inoculated with the overnight culture and grown at 37°C for about 4 h until the OD600 reached 0.5. The temperature was then shifted to 20°C, and expression was induced with 0.1 mM isopropyl-ß-D-thiogalactoside (IPTG). After 6 h of induction, cells were harvested by centrifugation at 4000 rpm for 20 min and resuspended in 30 mL of ice-cold lysis buffer (50 mM Tris-Cl pH 8.0, 150 mM NaCl, 1 mM PMSF, 0.5 mM MgSO4, 0.25 mg/mL lysozyme, 25 µg/mL DNaseI). Cells were broken using a cell disrupter (Avestin), and the soluble fraction was collected by centrifugation at 45,000 rpm at 4°C for 45 min with a Ti-45 rotor. Following filtration through a 0.2-µm filter (Millipore), the soluble fraction was loaded onto a Ni-NTA column (5 mL, Amersham Pharmacia Biotech) at 4°C. After washing with 150 mL of Buffer A (50 mM Tris-Cl pH 8.0, 200 mM NaCl, 1 mM glutamate, 5 mM methionine), recombinant proteins were eluted with a gradient of 300 mM imidazole in Buffer A. Protein containing fractions (110–140 mM imidazole) were dialyzed against size-exclusion chromatography (SEC) buffer (20 mM Tris-Cl pH 8.0, 150 mM NaCl, 1 mM EDTA) overnight, concentrated to 0.5 mg/mL (estimated from OD280, {varepsilon} = 63,500) using a Centricon YM10 (Amicon) and stored at -80°C.

SEC analysis
Recombinant proteins were concentrated to 1 mg/mL using a Microcon YM10 (Amicon) and 200 µL were loaded onto a Superose 12 10/30 column (Amersham Pharmacia Biotech) equilibrated with SEC Buffer at 4°C. A constant flow rate (0.5 mL/min) was used, and the elution patterns were detected by the absorbance at 280 nm.

Limited trypsin digestion
Trypsin digestion reactions (100 µL) were carried out by mixing 0.5 mg/mL of recombinant protein in SEC buffer (20 mM Tris-Cl pH 8.0, 150 mM NaCl, 1 mM EDTA) with a final concentration of 11 mM CaCl2 and trypsin/protein ratios of 0, 1/5000, 1/500, 1/250, 1/50 (w/w) at room temperature (rt) for 40 min. To stop the reactions, phenylmethylsulfonyl fluoride (PMSF) and EDTA were added to final concentrations of 1.5 and 20 mM, respectively, and the reactions were incubated for another 5 min at rt. The reaction mixtures were separated into two fractions (50 µL each) and mixed with 12.5 µL of 4x SDS sample loading buffer +/- 0.7 M ß-mercaptoethanol. The digestions were analyzed by SDS-PAGE.

Hemolysis assays
Recombinant proteins (0.5 mg/mL) were pretreated with 10 mM dithiothreitol (DTT) in hemolysis (HL) buffer (20 mM KH2PO4 pH 7.4, 150 mM NaCl, 1 mg/mL bovine serum albumin) or with a reducing agent-free buffer at rt for 5 min. Hemolysis reactions were then carried out by mixing 20 µL of recombinant protein and 500 µL of rabbit blood cells (RBC; Animal Technologies, Inc) diluted in HL buffer to 12.5% (v/v) with or without 10 mM DTT at 20°C for 20 min (Fig. 3Go) or 0, 2, 4, 6, 8, and 10 min (Fig. 4AGo). The reaction mixture was then centrifuged at 13,200 rpm (Eppendorf centrifuge 5415D) for 5 min, and the absorbance at 475 nm of the supernatant was measured spectrophotometrically.

Binding assay
Wild-type and {alpha}HL-A recombinant protein (0.5 mg/mL) were pretreated with 10 mM DTT in HL buffer or with a reducing agent-free buffer at rt for 5 min. The protein solution (20 µL) was then mixed with 200 µL of RBC diluted in HL buffer to 10% (v/v) with or without 10 mM DTT. The reaction mixture was incubated on ice for 1 h and centrifuged at 13,200 rpm (Eppendorf centrifuge 5415D) for 5 min at 4°C to separate the supernatant and pellet fractions. The resulting supernatant fraction was mixed with 35 µL of 6x SDS sample loading buffer, and the pellet fraction was resuspended in 40 µL of 1x SDS sample loading buffer. The amount of {alpha}HL was detected by Western blotting using anti penta-His antibody.

Oligomerization assays
Oligomerization reaction mixtures (100 µL) contained 8 mM dioctanoyl phosphatidylcholine (DiC8PC) and 0.5 mg/mL recombinant protein pretreated either with 10 mM DTT in SEC buffer (20 mM Tris-Cl pH 8.0, 150 mM NaCl, 1 mM EDTA) or with a reducing agent-free buffer at rt for 5 min. The reaction mixtures were incubated at rt for 1 h with stirring and were then mixed with 40 µL of 4x SDS sample loading buffer with or without 0.7 M ß-mercaptoethanol. The oligomerization reactions were detected by SDS-PAGE.

Cross-linking assays
The {alpha}HL-A mutant was dialyzed against cross-linking (XL) buffer (20 mM sodium phosphate pH 8.0, 150 mM NaCl) three times and pretreated with 10 mM DTT in XL buffer or with a reducing agent-free buffer at rt for 5 min. {alpha}HL-A (1 mg/mL) was then incubated with or without 8 mM DiC8PC at rt for 1 h to allow for oligomer formation. The resulting reaction mixture (50 µL) was incubated with 50 µL of glutaraldehyde diluted in XL buffer (final concentrations: 0, 0.25, 0.5, 2.5, and 25 µM) at rt for either 1 h or 24 h. SDS-PAGE was carried out to detect crosslinked {alpha}HL-A.


    Acknowledgments
 
We thank Michelle Montoya, Rich Olson, and Yu Sun for helpful discussions and critical comments on the manuscript. We also thank Hagan Bayley for valuable comments and for the gift of the pT7[{alpha}HL-His6] plasmid. This work was supported by a grant from the NIH. E.G. is an assistant investigator with the Howard Hughes Medical Institute.

The publication costs of this article were defrayed in part by payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 USC section 1734 solely to indicate this fact.


    References
 TOP
 Abstract
 Introduction
 Results
 Discussion
 Materials and methods
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