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Department of Pharmacology, Roy J. and Lucille A. Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242-1109, USA
Reprint requests to: John G. Koland, Department of Pharmacology, Roy J. and Lucille A. Carver College of Medicine, University of Iowa, Iowa City, IA 52242-1109, USA; e-mail: john-koland{at}uiowa.edu; fax: (319) 335-8930.
(RECEIVED June 4, 2005; FINAL REVISION August 6, 2005; ACCEPTED August 6, 2005)
| Abstract |
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Keywords: protein tyrosine kinase; ErbB; HER; FRET
Abbreviations: PTK, protein tyrosine kinase EGFR, epidermal growth factor receptor SH2, Src homology-2 A-loop, activation loop ICD, intracellular domain FRET, fluorescence resonance energy transfer
976, C-terminal truncation of EGFR at residue 976
1022, C-terminal truncation of EGFR at residue 1022 TNP-ATP, 2'(3')-O-(2,4,6-trinitrophenyl)-adenosine 5'-triphosphate BFP, blue fluorescence protein EGFR-CT, C-terminal domain of EGFR
Article published online ahead of print. Article and publication date are at http://www.proteinscience.org/cgi/doi/10.1110/ps.051630305.
| Introduction |
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EGFR function is regulated by multiple mechanisms to ensure proper spatial and temporal signaling in the cell including (1) the binding of at least 12 different ligands through homodimerization and heterodimerization with another ErbB family member, (2) internalization and down-regulation of the receptor, and (3) modulation of its kinase activity by autophosphorylation. These three modes of regulation are shared among many receptor PTKs. Distinguishing the EGFR from other receptor PTKs, however, may be the precise mechanism by which its catalytic activity is regulated, especially in the basal state. Whereas most receptor PTKs require the phosphorylation of the activation loop (A-loop) for full catalytic activity, biochemical and mutational studies have suggested that EGFR kinase activation does not require this phosphorylation (Honegger et al. 1988; Margolis et al. 1989). In this regard, the EGFR may have catalytic potential even in the absence of ligand stimulation, a notion that is consistent with a published crystal structure of the EGFR kinase domain. Here, despite its lack of phosphorylation, and in the absence of any cofactors or nucleotide substrate analogs, the A-loop is seen to adopt a conformation similar to the phosphorylated active form of other receptor PTKs, and the EGFR is apparently primed and ready for the phosphotransfer reaction (Stamos et al. 2002; Burgess et al. 2003).
Various studies have implicated the EGFR C terminus as an autoinhibitory domain (Bertics and Gill 1985; Bertics et al. 1988; Wedegaertner and Gill 1992; Cheng and Koland 1996). Kinetic analyses have indicated that the C-terminal domain regulates EGFR function by virtue of inhibiting PTK activity in the absence of phosphorylation (Bertics and Gill 1985; Bertics et al. 1988). Consistent with these findings were our steady-state fluorescence experiments characterizing the nucleotide and peptide substrate binding properties of the EGFR kinase. Here, we demonstrated that the C-terminal domain reduced the affinity of the nucleotide binding site for a fluorescent ATP analog, which suggested that the C-terminal domain modulates the nucleotide-binding properties of the PTK domain (Cheng and Koland 1996). However, the exact mechanism of this autoinhibitory effect of the C-terminal domain on the PTK remains unclear.
To obtain further insight into the mechanism of EGFR kinase regulation, we have here sought to determine whether structural changes in the EGFR C terminus occur upon its phosphorylation. To examine this possibility, the fluorescence resonance energy transfer (FRET) technique was employed by using recombinant purified EGFR-ICD proteins. The FRET technique enabled us to estimate the distance between the catalytic site of the kinase domain and the extreme C terminus and to monitor any changes in this distance. In FRET experiments, the fluorescent nucleotide analog, 2'(3')-O-(2,4,6-trinitrophenyl)-adenosine 5'-triphosphate (TNP-ATP) was used as an acceptor molecule bound at the catalytic site, and a green fluorescent protein variant, enhanced blue fluorescent protein (BFP), conjugated at the extreme C terminus served as a donor probe.
Our FRET experiments showed appreciable energy transfer between BFP and TNP-ATP in the nonphosphorylated state of the C-terminally full-length EGFR-ICD-BFP construct. A marked reduction in energy transfer was observed upon phosphorylation, indicating a conformational change of the BFP-fused region of the C terminus. The results of these studies provide molecular insight into the role of autophosphorylation in modulating different C-terminal conformations with respect to the kinase domain. Our FRET investigations also demonstrate the efficacy of the BFP/TNP-ATP FRET pair, and therefore indicate its potential use as a spectroscopic tool for future studies of nucleotide binding proteins.
| Results |
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1022-BFP (amino acid residues 6451022), and EGFR-
976-BFP (amino acid residues 645976). The full-length EGFR-ICD-BFP contains all five known autophosphorylation sites, whereas EGFR-
1022-BFP contains only one (Tyr 992), and EGFR-
976-BFP is devoid of all the major tyrosine autophosphorylation sites (Fig. 1A
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1022-BFP, and EGFR-
976-BFP proteins were analyzed by SDS-PAGE upon purification by using metal-ion chelation chromatography (Fig. 1B
1022-BFP, and EGFR-
976-BFP, respectively (Fig. 1B
The integrity of the intrinsic PTK activity of the BFP-labeled EGFR-ICD proteins was examined by in vitro phosphorylation reactions, in which phosphorylation was detected by anti-phosphotyrosine immunoblotting (Fig. 1C
). EGFR-ICD-BFP and EGFR-
1022-BFP demonstrated an ability to autophosphorylate, as evidenced by the detection of anti-phosphotyrosine signals only when Mn2+ and ATP were added. The enzymic activity of EGFR-
976-BFP, which lacks the C-terminal autophosphorylation domain, was assessed by determining its ability to phosphorylate EGFR-CT, a purified C-terminal domain of the EGFR that served as an exogenous substrate. Figure 1C
(lower panel) shows that EGFR-
976-BFP effectively phosphorylated the EGFR-CT substrate upon addition of Mn2+ and ATP.
Steady-state fluorescence analyses
The steady-state fluorescence excitation and emission spectra of the BFP-labeled EGFR-ICD proteins were recorded (Fig. 2A
). The excitation and emission spectra of the full-length and the truncated forms (
1022 and
976) displayed similar profiles, typical of the BFP fluorophore.
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Dynamic light scattering measurements
Prior to FRET analysis of the BFP-labeled EGFR-ICD proteins, the possibility of dimerization was assessed by dynamic light scattering analysis. This analysis yields the diffusion rate of a particle in solution and its apparent hydrodynamic radius (Rh) and molecular mass. Table 1
shows the Rh values and apparent molecular masses for each of the purified proteins. Under nonphosphorylating conditions, EGFR-ICD-BFP, EGFR-
1022-BFP, and EGFR-
976-BFP yielded Rh values consistent with their molecular masses, indicative of their homogenous monomeric distribution. To test whether the metal activator Mn2+ and/or phosphorylation promoted dimerization, the EGFR-ICD proteins were phosphorylated prior to dynamic light scattering analysis. The Rh values for the EGFR-ICD proteins under phosphorylating conditions did not change as a result of Mn2+ addition or phosphorylation, indicating their persistent monomeric state.
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2 value of 2/3, whereas the quantum yield value of 0.25 was used for the BFP donor (Patterson et al. 2001). The calculation based upon the above mentioned parameters yielded an R0 value of 39.1 Å. The estimated C-terminal distances to the active site for EGFR-ICD-BFP were 40 Å and 46 Å, in the nonphosphorylated and phosphorylated states, respectively (Table 2
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1022-BFP possesses an intermediate C-terminal truncation that retains 46 C-terminal amino acid residues, including an acidic motif (amino acid residues 979996) (Fig. 1A
1022-BFP has a short C-terminal length with this acidic motif still intact, the goal here was measuring its C-terminal distance to the TNP-ATP-bound active site to determine the overall folding geometry of this domain. Moreover, it was thought that FRET analysis of EGFR-
1022-BFP might reveal the role of the acidic motif on the conformation of this domain, especially in the context of phosphorylation (see Discussion). The results, however, indicated that phosphorylated and nonphosphorylated EGFR-
1022-BFP displayed similar energy transfer levels of 43% and 41%, respectively, corresponding to a negligible distance change from ~41 Å to 41.5 Å (Table 2
The EGFR-ICD-BFP and EGFR-
1022-BFP constructs were under phosphorylating conditions stoichiometrically phosphorylated (~1.0 mol phosphate/mol protein) as judged by radiochemical assays (data not shown) and the gel shifts seen in Figure 1B
. However, it might be that the C-terminal domain of the EGFR, with its multiple phosphorylation sites, can in the native context become more highly phosphorylated, and thus the C terminus/active site distance changes reported here for the EGFR-ICD-BFP protein possibly underestimate what could occur in the case of the authentic receptor.
As a control, EGFR-
976-BFP, which lacked the entire C-terminal region, was used. As expected, EGFR-
976-BFP yielded the highest level of energy transfer (57%) and was not subject to significant changes under phosphorylating conditions. Table 2
summarizes our energy transfer results and dissociation constants (Kd) for TNP-ATP binding for the BFP-labeled EGFR-ICD proteins derived from their respective hyperbolic curve fits.
| Discussion |
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Given that the C-terminal domain of the EGFR must first access the catalytic site for phosphorylation and then become accessible to intracellular signaling proteins, conformational changes would be predicted in the course of receptor activation and signaling. Indeed, it was previously reported by analytical gel filtration analyses that C-terminal phosphorylation induces a structural change in the EGFR-ICD (Cadena et al. 1994). The present studies employed the FRET technique to further characterize these conformational changes. FRET measurements yielded an estimate of the distance between a C-terminal BFP donor and active-site-bound TNP-ATP and revealed how phosphorylation changed this distance and conformation. Our technique for site-specific fluorescent labeling of the EGFR-ICD with the BFP module yielded catalytically competent recombinant proteins, as indicated by phosphorylation and TNP-ATP binding assays (Figs. 1
, 2
).
Our initial results demonstrated that the TNP-ATP/BFP pair served as a functional FRET reporter system, as evidenced by the marked quenching of BFP donor fluorescence as the TNP-ATP acceptor occupied the active site (Fig. 3
). Determining the state of aggregation for these ICD proteins was crucial to discern whether the observed energy transfer was intramolecular or intermolecular, or a combination of both. To address this question, each EGFR-ICD construct was subjected to dynamic light scattering analysis of polydispersity, i.e., to gauge the fraction of monomers and/or dimers. As shown in Table 1
, the full-length (EGFR-ICD-BFP), as well as both forms of the C-terminally truncated proteins (EGFR-
976-BFP and EGFR-
1022-BFP) existed almost exclusively as monomers, as reflected by their apparent molecular mass and homogeneity. The same light scattering analyses under phosphorylating conditions (Mn2+ and ATP) did not indicate dimerization, implying that the observed FRET was intramolecular in nature.
At the onset of our FRET studies, it was important to verify that the observed quenching of the BFP donor by the TNP-ATP acceptor reflected true Förster FRET and was not due to interactions of the unbound TNP-ATP fraction and the BFP moiety. To this end, the BFP module was proteolytically cleaved from the EGFR-ICD construct and control TNP-ATP quenching profiles were obtained. The minimal BFP quenching observed was near-linear and consistent with the anticipated amount of inner filter quenching. These control quenching profiles were fit to an exponential curve to allow correction of subsequent FRET titrations for concentration-dependent inner filter quenching.
The most notable finding from our FRET experiments was the significant reduction in energy transfer of the full-length EGFR-ICD upon phosphorylation, likely the result of the BFP-fused C terminus moving away from the TNP-ATP-bound active site. It is uncertain on the basis of our results whether this conformational change is strictly limited to the C-terminal region near the BFP module or reflects a larger segmental movement of this domain.
Our FRET measurements also provided insight into the overall folding geometry of the C-terminal domain with respect to the kinase core. It is currently unknown precisely what kind of tertiary structure this phosphorylation domain adopts in nonphosphorylated and phosphorylated states. Based upon our analyses of the C-terminal truncations, the efficiency of energy transfer did not necessarily correlate to the C-terminal lengths, suggesting that it is unlikely that the C terminus assumes a fully extended conformation, in which case a minimal FRET would also have been observed in the case of the full-length protein. The C-terminally full-length EGFR-ICD in the nonphosphorylated state displayed a slightly higher level of energy transfer than does the intermediate C-terminal truncation, EGFR-
1022 (cf. ~46% and ~42%; Table 2
), even though its C terminus is ~180 amino acid residues longer. A structural model that accounts for this observation is one in which the C terminus adopts a "loop-like" conformation with respect to the kinase domain. It is possible that this loop configuration facilitates a physical interaction of the extreme C-terminal phosphorylation sites with the kinase core.
Indeed, there exists some structural evidence of a C-terminalinteraction with the kinase core. One crystal structure of the EGFR kinase domain includes a partial tertiary structure of the first 40 C-terminal residues with respect to the kinase core (Wood et al. 2004). Specifically, in this structure the ordered C-terminal residues 971980 form a short
-helix that interacts intramolecularly with the N- and C-terminal lobes of the kinase core. Moreover, this C-terminal segment, by virtue of close physical proximity, appears to partially block the front of the ATP binding cleft. A second ordered segment containing residues 986994 is shown to interact with the N-terminal lobe of the kinase domain and could be a point at which the C-terminal domain loops back in the direction of its point of attachment to the kinase core. Our results are consistent with this structural model. A second EGFR kinase domain structure shows an ordered segment of the C-terminal domain interacting intermolecularly with the kinase core of a crystal neighbor (Stamos et al. 2002). While our work does not rule out the possibility that such intermolecularinteractions between cytoplasmic domains occur in the context of receptors dimerized in a native membrane, the EGFR-ICD proteins investigated in this study were monomeric under both nonphosphorylating and phosphorylating conditions (Table 1
). Thus the structural changes seen here with C-terminal domain phosphorylation could reflect intramolecular interactions between the C terminus and the kinase core, which are possibly involved in kinase regulation.
The distances from the BFP module to the active site bound TNP-ATP derived from our FRET measurements (Table 2
) should be viewed as estimates. The BFP module was likely relatively immobile on the time scale of its fluorescence, especially compared with smaller fluorescent probes. Hence, it was possible that assigning a
2 value of 2/3, which assumes random orientation of the BFP/TNP-ATP chromophores, could affect the accuracy of our distance calculations. Despite the dramatic reduction in energy transfer upon phosphorylation for the full-length protein (from 46% to 28%), the difference translates to a relative distance change of only ~6 Å from BFP to the active site. Again, it is unclear whether the ~6 Å excursion from the active site for the BFP reflects only the local movement of the extreme C-terminal region or a large segmental rearrangement. Overall, the distance measurements vary over only a small range (3746 Å) for three constructs that differ by up to 200-amino acid residues in length.
FRET analysis of EGFR-
1022-BFP, in particular, allowed us to examine the role of a specific structural motif contained within this C-terminal fragment. The structural modeling study of Landau and coworkers (2004) has implicated an acidic motif (residues 980991) in providing electrostatic stability for dimerization of EGFR kinase domains. Given that the short C-terminal fragment of EGFR-
1022-BFP still retained this acidic motif, it was of particular interest in assessing how the high negative charge distribution of its C terminus would impact the energy transfer and C-terminal conformation, especially when the single tyrosine residue (amino acid 992) became phosphorylated. The results indicated that energy transfer levels were not significantly influenced under phosphorylating conditions, suggesting a lack of conformational changes of this C-terminal fragment. It may be that the short C-terminal fragment of EGFR-
1022-BFP simply lacks the flexibility of the full-length C-terminal domain to assume a similar loop-structure when fused to a BFP module. Alternatively, the C-terminal portion containing the major sites of autophosphorylation, such as tyrosine 1148 and 1173 might be necessary for facilitating this loop conformation and yielding phosphorylation-dependent conformational changes.
In summary, the present work exploits a novel FRET donor/acceptor reporter system. The strategy entailed the use of BFP and TNP-ATP as a FRET pair, which have significant spectral overlap. Also, the small unobtrusive nature of TNP-ATP possessed a distinct advantage over the widely used dual modified-GFP FRET reporter pairs (such as cyan fluorescent protein and yellow fluorescent protein), since two relatively large protein modules are more likely to perturb the structure of the protein of interest. FRET analysis using this novel BFP/TNP-ATP donor/acceptor pair here allowed a characterization of the structural conformations of the EGFR C-terminal phosphorylation domain with respect to the kinase core, which provides molecular insight into the function of the C-terminal domain in kinase regulation and signaling.
| Materials and methods |
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Generation of recombinant baculoviruses
The baculovirus expression system was used to generate recombinant EGFR domains as hexahistidine-tagged proteins to be purified by metal ion chelation chromatography. All recombinant baculoviruses were constructed by using the Bac-to-Bac system (Life Technologies). A template vector for the expression of N-terminally hexahistidine-tagged EGFR ICD was constructed by a recombinant PCR method. Here, a methionine start codon followed by six histidine codons were fused upstream of the EGFR-ICD-encoding cDNA (encompassing amino acid residues 6641186) and cloned behind the polyhedron promoter in the pFastBac1 plasmid. A vector containing the BFP sequence was restriction digested and C-terminally fused in frame with the EGFR-ICD coding sequence of the pFastBac1-EGFR-ICD. The C-terminally truncated forms EGFR-
976-BFP and EGFR-
1022-BFP were generated via subcloning of PCR amplified C-terminal segments of the EGFR cDNA sequence corresponding to truncations at amino acid residues 976 and 1022, respectively. EGFR-CT was generated by a similar method where the EGFR-CT-encoding cDNA (EGFR amino acids 9721186) was PCR amplified and sub-cloned into and behind the hexahistidine codons incorporated into pFastBac1. Subsequent generation of recombinant baculoviruses from each recombinant pFastBac1 donor plasmid was performed according to manufacturer protocols. Purified recombinant viruses were amplified with three rounds of infection in Sf21 cells grown at 27°C using a multiplicity of infection (MOI) of 0.1. Viral supernatants were harvested 4872 h post-infection.
Purification of recombinant EGFR proteins
Sf21 cells were infected with baculovirus at a MOI of 2. Forty-eight hours post-infection, cells were harvested by centrifugation at 1000g for 5 min and gently washed with suspension buffer (20 mM HEPES at pH 7.4, 0.5 M NaCl, 250 mM sucrose, protease inhibitors [5 µg/mL aprotinin, 5 µg/mL leupeptin, 2 µM pepstatin A, 1 mM PMSF]). Cells were again pelleted, resuspended with sucrose-free suspension buffer, and then lysed using a microsonicator (four 15-sec bursts). Sonication and all subsequent steps were performed at 4°C or on ice. After sonication, the cell lysate was centrifuged at 40,000g for 20 min, and the supernatant was collected and supplemented with 0.05% Triton X-100. The lysate was run through a Talon cobalt resin column (Clontech) equilibrated with 20 mM HEPES (pH 7.4), 0.5 M NaCl, and 0.05% Triton X-100 at a 0.5 mL/min flow rate. The column was then washed with 20 column volumes of wash buffer (20 mM HEPES at pH 7.4, 0.5 M NaCl, and 8 mM imidazole, 0.05% Triton X-100) and then washed with an additional 10 column volumes of Triton X-100-free wash buffer. Hexahistidine-tagged proteins were eluted with 20 mM HEPES (pH 7.4), 0.5 M NaCl, and 150 mM imidazole. Upon elution, the purified proteins were dialyzed exhaustively against 20 mM HEPES (pH 7.4), 100 mM NaCl, and 10% (v/v) glycerol.
EGFR-ICD phosphorylation and PTK assays
Kinase assays were performed at 25°C by preincubating a 0.5 µM concentration of the kinase in 1 mM MnCl2 for 5 min in buffer A (20 mM HEPES at pH 7.4, 50 mM NaCl) and then initiated by addition of 100 µM ATP. The reactions were quenched after 30 min with 3 mM EDTA. Proteins were resolved by SDS-PAGE and immunoblotted with EGFR (Ab12, Lab Vision) and phosphotyrosine (PY20, BD Transduction Laboratories) antibodies. In FRET experiments, the nonphosphorylated protein samples to be analyzed were each pretreated with LAR phosphatase (20 U/1.5 mL of 0.5 µM protein) for 30 min at 25°C to ensure full dephosphorylation of the proteins. Phosphorylated samples for FRET measurements were subjected to preincubation with 1 mM MnCl2 for 5 min and then a 30-min incubation at 25°C after addition of 100 µM ATP. Both phosphorylated and nonphosphorylated protein samples were treated with 3 mM EDTA and then exhaustively dialyzed against buffer A.
Steady-state fluorescence excitation and emission measurements
Steady-state excitation and emission spectra were recorded with an SLM4800C spectrofluorimeter. All measurements were made at 25°C with 8-nm slits for excitation and emission. Excitation spectra of the BFP-labeled proteins were recorded in the ratio mode with fixed emission at 450 nm, while the emission spectra were recorded with excitation at 380 nm. The fluorescence emission spectra of TNP-ATP were recorded with excitation at 418 nm.
Dynamic light scattering analysis of EGFR-ICD-BFP proteins
Light scattering measurements were made with a DynaPro Molecular Sizing Instrument with Dynamics software. The BFP-labeled EGFR-ICD proteins were analyzed in 20 mM HEPES (pH 7.4) and 100 mM NaCl at 4°C. Protein samples were measured four times with 20 counts per measurement. Data reflect the subtraction of solvent noise peaks present in the samples.
FRET studies
The efficiency of energy transfer (E) from donor to acceptor is dependent upon the distance of their separation (R) according to Försters theory: E = 1/[1 + (R/R0)6], where R0 corresponds to the distance at which energy transfer is 50% efficient. The R0 value is determined by the formula R0 = (9.79 x 103 Å)(J
2Q0n4)1/6 where J is the spectral overlap integral,
2 is the donor-acceptor dipole orientation factor, Q0 is the normal quantum yield of the donor, and n is the refractive index of the medium. In the present work, a numerical integration method was used to calculate the spectral overlap integral J of BFP and TNP-ATP. The estimate for
2 was 2/3, a value that assumes random orientation of the probes. A value of 1.33 was assigned for the refractive index, n, and the quantum yield, Q0, for BFP was determined previously (Patterson et al. 2001).
| Acknowledgments |
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