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1 Department of Biochemistry and Molecular Biology and 2 Department of Public Health, University of Parma, 43100 Parma, Italy
3 Department of Chemistry and Biochemistry, University of Oklahoma, Norman, Oklahoma 73019, USA
4 Department of Biochemistry, Albert Einstein College of Medicine, Bronx, New York 10461, USA
Reprint requests to: Stefano Bettati, Department of Public Health, University of Parma, 43100 Parma, Italy; e-mail: stefano.bettati{at}unipr.it; fax: 39-0521-903712.
(RECEIVED April 1, 2005; FINAL REVISION May 9, 2005; ACCEPTED May 9, 2005)
| Abstract |
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-carboxyl subsite of O-acetylserine sulfhydrylase, triggering a transition from an open to a closed conformation. This finding suggests that serine acetyltransferase can inhibit O-acetylserine sulfhydrylase catalytic activity with a double mechanism, the competition with O-acetylserine for binding to the enzyme active site and the stabilization of a closed conformation that is less accessible to the natural substrate. Keywords: serine acetyltransferase; O-acetylserine sulfhydrylase; cysteine synthase; fluorescence; protein dynamics; enzymes; conformational changes
Abbreviations: SAT, serine acetyltransferase OASS, O-acetylserine sulfhydrylase HiOASS/HiSAT, OASS and SAT from H. influenzae StOASS/StSAT, OASS and SAT from S. typhimurium PLP, pyridoxal 5'-phosphate OAS, O-acetylserine P10, decapeptide corresponding to the last 10 residues of HiSAT S10, scrambled decapeptide
Article published online ahead of print. Article and publication date are at http://www.proteinscience.org/cgi/doi/10.1110/ps.051492805.
| Introduction |
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In order to gain insight into the mechanism of reciprocal regulation in the complex, we have investigated the effect of intact SAT and the SAT C-terminal decapeptide binding to HiOASS on the fluorescence emission properties of the coenzyme pyridoxal 5'-phosphate (PLP). PLP fluorescence is sensitive both to local changes in the chromophore microenvironment and, by virtue of Förster energy transfer from Trp50 located in the N-terminal domain of OASS (Benci et al. 1999a), to large-scale conformational dynamics involving variations in tryptophan to PLP distance and reciprocal orientation. Tryptophan and PLP fluorescence of StOASS has been previously exploited (Benci et al. 1997, 1999a) to investigate the open-to-closed transition, which underlies OASS catalysis and regulation (McClure and Cook 1994; Burkhard et al. 1999).
| Results |
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The specificity of the interaction of P10 with HiOASS was evaluated by control experiments with a scrambled peptide, DNLINGIDMG (S10). S10 at concentrations up to 600 µM does not elicit any significant effect on the emission properties of HiOASS (data not shown), indicating absence of a tight binding.
Stoichiometric titrations of HiOASS with either HiSAT or P10 (Fig. 3
), give a stoichiometric ratio of 1.43 and 0.95, respectively, i.e., two dimers of OASS form a complex with a hexamer of SAT and one P10 binds to one subunit of OASS. The same stoichiometry has already been suggested, based on size-exclusion chromatography data, for the complexes of E. coli (Mino et al. 2001) and S. typhimurium (Kredich et al. 1969). Addition of a molar excess of P10 to OASS saturated with SAT gives no further spectral changes (data not shown), indicating that there are no sites on OASS available for P10 binding.
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| Discussion |
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The binding of either SAT or P10 has comparable effects on cofactor fluorescence properties, with a three- to fourfold increase in the emission intensity and a concomitant blue-shift of the emission maximum (Fig. 2AC
). A similar increase in the long-wavelength emission band upon excitation at 298 nm was observed for StOASS-A upon addition of acetate and L-cysteine, and was found to be pH-dependent (McClure and Cook 1994). Binding of L-cysteine, or other substrate analogs, as L-serine and methionine, is followed by the formation of the external aldimine that is, in turn, associated with a conformational change from an open to closed structure (Schnackerz et al. 1995). Structural data indicate that the conformational change might be triggered by binding of the
-carboxylate of the amino acid substrate to an
-carboxyl subsite in the enzyme active site (Burkhard et al. 1999). The
-carboxylate forms a strong hydrogen-bonding network with residues Pro67, Thr68, Asn69, and Gly70, which are part of the so-called "asparagine-loop." The conformational change causes an increase in the lifetime of the excited state of the PLP Schiff base, which is apparent in the increase in the emission intensity of the ketoenamine tautomer (Schnackerz et al. 1995). Acetate, which cannot form the external Schiff base, is believed to abortively occupy the
-carboxyl subsite of OASS, triggering conformational changes similar to those associated with the transition from the internal to the external aldimine of PLP (McClure and Cook 1994; Schnackerz et al. 1995; Burkhard et al. 1999). Saturating amounts of SAT, P10 or acetate cause a comparable blue-shift of about 15 nm of the emission peak maximum of HiOASS, whereas the increase in emission intensity is slightly less pronounced upon the addition of SAT or P10 compared to the addition of acetate. These findings strongly support the hypothesis that SAT or P10 binding to OASS is able to trigger the same dynamic events associated with the transition from the open to the closed conformation. Our results agree with the known effects of cysteine synthase complex formation on OASS kinetic parameters (Kredich et al. 1969; Droux et al. 1998; Mino et al. 2000b), and show that binding of SAT to the OASS active site, besides exerting a competitive inhibition with respect to OAS, stabilizes a protein conformation with a reduced accessibility of the active site to its natural substrate (Burkhard et al. 1999). Recently, crystallographic studies (Huang et al. 2005) have demonstrated that P10 binds to the OASS active site with its C-terminal
-carboxylate fitting in the same position occupied by the
-carboxylate of L-methionine in external aldimine linkage with PLP (Burkhard et al. 1999). The observation that HiSAT C-terminal peptide can bind to StOASS with similar affinity to that measured for HiOASS suggests that conserved residues could play a key role in complex formation. The last residue, Ile267 in HiSAT, is a conserved residue in SAT sequences from Gammaproteobacteria (Fig. 4
), and is involved in a network of interactions with OASS (Huang et al. 2005). In the crystal structure only electron density corresponding to the last four residues of the decapeptide is visible, with only Asn266 and the C-terminal residue Ile267 interacting with the OASS active site. Ile267 probably plays a fundamental role in establishing the interactions that drive complex formation, occupying the site where the lateral chain and
-carboxyl group of the substrate bind in the external aldimine intermediate (Burkhard et al. 1999; Huang et al. 2005). In the presence of the inhibitor L-cysteine the C-terminal region of SAT, which is normally unstructured, folds in a short
-helix and hampers binding of acetylCoA and the subsequent processing of L-cysteine (Olsen et al. 2004). In the inhibited structure the binding pocket of the adenine moiety of acetylCoA is occupied by Phe256 (Olsen et al. 2004), which appears to be a conserved residue in the C-terminal sequences of Gammaproteobacteria (Fig. 4
). These observations point to a dual functional role for the C-terminal "mobile arm" of SAT: an intrasteric inhibitor of SAT catalytic activity and an effector of the OASS active site.
Previous reports on E. coli and S. typhimurium proteins using sedimentation equilibrium experiments (Kredich et al. 1969;Mino et al. 2001) suggested that a hexamer of SAT should bind two dimers of OASS. More recently, it has been suggested that each hexamer of SAT could bind up to six dimers of OASS, one for each C-terminal domain of the protein (Pye et al. 2004). This is the first report of a direct determination of the stoichiometry of binding of SAT to OASS, clearly indicating that two dimers of OASS bind to one hexamer of SAT. Spectroscopic changes at saturating concentrations of either SAT or P10 are comparable, suggesting similar dynamic events taking place with both ligands. Furthermore, titration of OASS with P10 in the presence of stoichiometric amounts of SAT does not induce any spectral change, indicating that there are no OASS active sites available for P10 binding. This observation supports the quaternary geometry of the cysteine synthase complex proposed by Hindson et al. (2000), and is compatible with two different scenarios (Scheme 2
): a SAT trimer binds to only one OASS active site, triggering the closure of the other site through allosteric communication (Scheme 2A
), or SAT is able to occupy, or at least to physically restrict access to, both OASS active sites (Scheme 2B
). The latter configuration could be allowed by the position of the mobile C-terminal arms of SAT (Olsen et al. 2004). OASS-A plays a key role in the control of the cysteine biosynthetic pathway both directly through the formation of regulatory bi-enzymatic complexes with SAT and ATP sulfurylase and indirectly via its substrate OAS and its product L-cysteine that function as reporters of sulfur supply to the cell and can modulate the activity and the expression of the enzymes of the cysteine regulon (Scheme 1
). The modulation of cysteine biosynthesis is thus achieved through a complex mechanism encompassing transcriptional control, activity regulation via feedback inhibition, and protein protein interaction. The strength of the OASSSAT complex is three orders of magnitude higher than that of OASSATP sulfurylase, suggesting that the relative abundance and affinity of the proteins involved in complexes could represent a further level of regulation. Many aspects of the organization of the cysteine biosynthetic pathway await further investigations, as for example a probable organization of some proteins in multienzyme complexes (Wei et al. 2002) and the role and regulation of the B isozyme of OASS.
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| Materials and methods |
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Recombinant OASS-A from S. typhimurium (StOASS-A) was expressed in E. coli cells NK3 (Hulanicka et al. 1986) transformed with the pCKM3 expression vector, as previously described (Tai et al. 1993). The cells were disrupted by sonication in the presence of 0.2 mMPLP. The crude extract was treated with streptomycin sulfate and ammonium sulfate as previously described (Hara et al. 1990). The solution containing OASS-A was desalted by dialysis and loaded on a DEAE FF column (Amersham Biosciences). OASS-A was eluted with a linear gradient from 0 to 0.5 M NaCl in 10 mM HEPES (pH 8). Fractions containing OASS-A were concentrated and loaded on an Ultrogel AcA44 column (Sigma-Aldrich) and eluted with a buffer containing 10 mM HEPES, 200 mM NaCl (pH 8). Fractions with an absorbance ratio (A280/A412)
3.4 were pooled, dialyzed against 10 mM HEPES (pH 8), and stored at 80°C. OASS-B from S. typhimurium (StOASS-B) was expressed and purified in the recombinant form (P.F. Cook, unpubl.).
Peptides
The decapeptide (P10) corresponding to the C-terminal sequence of HiSAT (GIDDGMNLNI) and the corresponding scrambled peptide (DNLINGIDMG) were synthesized with a Biosystems 433A peptide synthesizer (Perkin-Elmer) and subsequently purified by HPLC. The peptides were dissolved in 25 mM HEPES buffer (pH7.9) and dialyzed O/N against the same buffer using a Spectra/Por dialysis membrane (Spectrum Laboratories, Inc.) with a 500-Da MW cutoff. The peptide solutions were stored at 80°C. The concentration of the peptides was calculated using published methods (Gratzer 1989). The calculated extinction coefficient at 210 nm was 19,961 M1 cm1.
Chemicals and buffers
Chemicals, purchased from Sigma-Aldrich, were of the best available quality and were used without further purification. Experiments were carried out in 100 mM HEPES buffer (pH 7), at 20 ± 0.5°C.
Absorption and steady-state fluorescence measurements
Absorption spectra were collected with a Cary 400 Scan spectrophotometer (Varian Inc.) using quartz microcuvettes. The cell-holder temperature was kept constant via a circulating water bath. Fluorescence measurements were carried out using a FluoroMax-3 fluorometer (HORIBA), equipped with a thermostated cell-holder. Emission spectra upon excitation at 298 nm were collected between 310 nm and 550 nm. Spectra upon excitation at 412 nm were collected between 425 nm and 650 nm. Absorption and fluorescence spectra were corrected for the buffer contribution.
Data analysis
The dependence on decapeptide concentration of fluorescence emission at 500 nm upon excitation at 412 nm was fitted to a binding isotherm for noninteracting sites
![]() | (1) |
or to the equation for a cooperative binding (Hill equation)
![]() | (2) |
where I is the signal intensity at a given ligand concentration, [L] is the decapeptide concentration, Kdiss is the dissociation constant of the complex, n is the number of binding sites, and h is the Hill coefficient.
Multiple sequence alignments
SAT aminoacid sequences from representative Gammaproteobacteria, retrieved by proteinprotein Blast search (Altschul et al. 1997) of nonredundant sequence databases, were aligned using the ClustalW program (Thompson et al. 1994) set at the default parameters. The sequence conservation pattern was visualized using the programme ESPript (Gouet et al. 1999).
| Acknowledgments |
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