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1 Department of Pharmaceutical Chemistry, Ernest Mario School of Pharmacy, Rutgers, The State University of New Jersey, Piscataway, New Jersey 08854, USA
2 Department of Chemical Biology, Ernest Mario School of Pharmacy, Rutgers, The State University of New Jersey, Piscataway, New Jersey 08854, USA
3 The Structural Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York 10021, USA
4 The Cancer Institute of New Jersey, New Brunswick, New Jersey 08901, USA
(RECEIVED October 12, 2006; FINAL REVISION December 8, 2006; ACCEPTED December 16, 2006)
| Abstract |
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Keywords: ephrin; Eph receptor; surface plasmon resonance; receptor dimerization; growth cone collapse
| Introduction |
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Both Eph receptors and ephrins interact predominantly with members of their own class with only a few exceptions, such as EphA4 that binds to ligands from both classes and ephrin-A5 that interacts with EphB2 (Himanen et al. 2004; Pasquale 2005). The current model of Ephephrin interaction involves the initial formation of an Ephephrin heterodimer complex, which then interacts with another heterodimer complex to form a tetrameric Ephephrin complex where each ligand interacts with two receptor monomers and each receptor with two ligand monomers. The tetrameric Ephephrin complexes then form higher-ordered Ephephrin clusters, which may be responsible for Ephephrin signaling (Pasquale 2005). Biological effects attributed to the two membrane-bound proteins are the result of the "forward" signaling in Eph-expressing cells and/or the "reverse" signaling in the ephrin-expressing cells (Murai and Pasquale 2003). Experimentally, dimerization of an ephrin ligand or Eph receptor is achieved by using the disulfide-linked immunoglobulin Fc-fusion form of the extracellular domain (ECD) of the ligand or receptor. The forced dimeric Fc-fusion proteins can be further cross-linked using anti-Fc IgG antibody to form higher-ordered oligomers. Studies using cross-linked fusion proteins, as well as membrane- or bead-bound proteins, lead to the conclusion that functional Eph/ephrin signaling requires multimerization/aggregation that is facilitated by membrane attachment (Davis et al. 1994; Stein et al. 1998). The kinetic constants of interaction between a dimeric ephrin ligand and a dimeric Eph receptor have been reported for both classes and are in the nanomolar to mid-picomolar range (Lackmann et al. 1997, 1998; Himanen et al. 2004; Day et al. 2005). However, studies reported on monomeric ligands are limited only to the binding of monomeric ephrin-A3 and A5 to EphA3, and the results indicate that monomeric ephrins bind to Eph receptors with much lower affinity (Lackmann et al. 1997; Day et al. 2005). Our interest in designing receptor class-specific antagonists prompted us to determine the binding kinetics of representative ephrin ligandEph receptor pairs from both classes and correlate their binding affinities with their biological activities in a functional assay.
| Results and Discussion |
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300500 response units (RUs) of the receptor proteins were used to minimize mass transfer effects. The SPR sensorgrams for the proteinprotein interactions between ephrin and Eph pairs are shown in Figure 2, and the resulting kinetic parameters derived from these sensorgrams are summarized in Table 1.
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Our analyses reveal that the increase in binding affinity of the dimeric ephrins for the Eph receptors is due to a dramatic decrease in apparent dissociation rate constant, k d (e.g., 2.7 x 102 sec1 for ephrin-A5-Fc to EphA3-Fc vs. 3.6 x 105 sec1 for ephrin-A5-ECD to EphA3-Fc), which is consistent with the increased avidity of bivalent 2:2 interactions. Interestingly, comparison of the increase in apparent affinity from monomeric to dimeric ephrin ligands between the A- and B-classes indicates that the forced dimerization using Fc fusion was more effective in the case of the ephrin-A5 ligand, leading to a dramatic 6000- to 9000-fold decrease in apparent dissociation constants, compared with only
30- to 60-fold decrease in the case of ephrin-B2. Such a dramatic difference in the effects of dimerization on the apparent affinities was unexpected but could be due to the varying structural restrictions placed on the binding domains by the adjacent Fc domains, which may not always allow for optimal protein positioning during the formation of tetrameric ligandreceptor complexes. In the case of the ephrin-A5-Fc/EphA3-Fc interaction, there might be fewer structural restrictions due to Fc fusion, while the second binding event during the ephrin-B2-Fc/EphB2-Fc complex formation might be more affected by Fc fusion, leading to a reduced enhancement in the overall binding affinity. Of course, we cannot yet completely exclude the effect of intrinsic structural differences between the two classes.
To determine the effect of the increased binding affinity on the biological function of ephrins, we further determined their activities in a growth cone collapse assay using dissected rat hippocampi. Rat hippocampi contain both classes of Eph receptors and, therefore, respond to both classes of ephrin ligands. The neuronal projections, or axons, are tipped by growth cones, the growth of which is inhibited when ephrins interact with Eph receptors (Drescher et al. 1995). The primary neuronal culture was selected over other artificial systems because it would make our studies more relevant to the biological functions of ephrins. We compared the effects of different concentrations of monomeric, dimeric, and aggregated (anti-Fc IgG cross-linked) ephrin-B2 and ephrin-A5 on the growth cones in rat hippocampus cultures at different concentrations. Figure 3 shows the percentage of intact growth cones remaining after incubation with various concentrations of the proteins under investigation. Although further studies are needed to characterize which Eph receptor was responsible for the observed activity to a given ligand, the results clearly indicate that growth cone collapse is a function of the multimerization state and concentration of the ephrin ligands and correlates well with the apparent equilibrium dissociation constants. Monomeric ephrins were the least effective in causing growth cone collapse. The monomeric ephrin-B2-ECD did not cause any significant changes in the number of growth cones at all three concentrations used, while 10 nM of the dimeric ephrin-B2-Fc caused a significant decrease in the number of growth cones. Aggregation using anti-Fc IgG antibodies further enhanced the growth cone collapse. Consistent with the increased binding affinity of the ephrin-A5 constructs relative to ephrin-B2, the concentration needed to cause growth cone collapse was lower for the ephrin-A5 than for the corresponding ephrin-B2 constructs. Although it is possible that there are differences in the expression of the two different classes of Eph receptors in the axons, there is a clear correlation between the biological activity and the receptor binding affinity of the different ephrin forms. The results in Figure 3B also document that monomeric ephrin-A5 causes
50% reduction in growth cones at 100 nM compared with the control. Furthermore, monomeric ephrin-A5 at a concentration of 100 nM was comparable to, if not surpassing, the effect on growth cones caused by dimeric ephrin-A5-Fc at a concentration of 1 nM. This is somewhat unexpected, as the dimeric ephrin-A5 has a 6000-fold lower equilibrium dissociation constant than the monomeric form for binding to its receptor. It is also evident that just occupying the receptor is not sufficient to cause growth cone collapse, whether the ephrin used is a monomer or dimer, and that the concentrations needed to cause growth cone collapse are much higher than the apparent equilibrium dissociation constants.
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30- to 60-fold, while dimerization of ephrin-A5 increases the apparent binding affinity between ephrin-A5 and EphA3 by
6000-fold. Such a dramatic difference in the effect of dimerization could be due to varying degrees of structural restrictions caused by the Fc-fusion domains in the different Eph/ephrin complexes. The increase in binding affinities from monomers to dimers and from ephrin-B2 to ephrin-A5 correlated well with enhanced activation of Eph receptors and growth cone collapse. Consistent with the notion that Eph/ephrin signaling requires dimerization or aggregation, monomeric ephrin-B2 did not show any activity in our growth cone collapse assay. However, monomeric ephrin-A5 was unexpectedly found to promote growth cone collapse at high concentrations. These kinetic data and the correlation with biological function provide a better understanding of the interactions between ephrin and Eph receptors, and should facilitate the design of Eph-signaling inhibitors that interfere with the ligandreceptor interactions (Mammen et al. 1998). | Materials and methods |
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Surface plasmon resonance measurements
Binding of representative ephrin ligands to Eph receptors was carried out on a Biacore 3000 SPR biosensor (Biacore International AB) using EphB2-Fc- and EphA3-Fc-immobilized CM5 chips essentially as described (Lackmann et al. 1997; Day et al. 2005). Briefly, EphB2-Fc and EphA3-Fc (6 µg/mL) were coupled onto CM5 chip surfaces at 10 µL/min using a standard amine coupling protocol with EDC (N-ethyl-N'-[dimethylaminopropyl]carbodiimide)/NHS (N-hydroxysuccinimide). The density was controlled at an increased response level of 300500 response units (RU), which would yield an Rmax of
100 RU in kinetic binding experiments. The ephrin ligand proteins were serially diluted in 10 mM HEPES buffer, pH 7.4 containing 150 mM NaCl, 3.4 mM EDTA, and 0.005% Tween 20 (running buffer), and the kinetic experiments were carried out at 25°C and a flow rate of 50 µL/min unless otherwise noted. The low surface density of sensor chips and the high flow rate were used to minimize mass transport limitation and the effects of steric hindrance. The surface of the sensor chip was regenerated before injecting subsequent samples with 3 M MgCl2 in 0.075 M HEPES buffer containing 25% ethylene glycol, pH 5.8 (the regeneration buffer) at 100 µL/min for 1 min followed by two washes (1 min each) at 100 µL/min with running buffer. All interactions were run with an association time of 5 min and a dissociation time of 6 min except that of ephrin-A5-Fc with EphA3-Fc. Because ephrin-A5-Fc dissociates too slowly from the EphA3-Fc sensor surface, the association phase was extended to 10 min while the dissociation phase was extended to 100 min, both at a flow rate of 25 µL/min. The binding kinetics were analyzed globally using BIAevaluation software 4.1 from the SPR sensorgrams after double subtraction of responses from the reference surface and the zero blank in the absence of ephrin ligands. The single component model of 1:1 Langmuir binding (L + R
LR) was first used for all binding interactions except for that of monomeric ephrin-B2-ECD to EphB2-Fc, where fast dissociation kinetics made it necessary to use the steady state binding (Req) and the Req vs. C plot to derive the K D (BIAapplications Handbook, BIAcore). For the binding of the dimeric ephrin ligands to Eph receptors, the bivalent analyte model (L2 + 2R
L2R + R
L2R2) was also used to represent the following interaction between the dimeric ephrin ligands and the immobilized Eph receptors (shown in Scheme 1).
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| Footnotes |
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Reprint requests to: Longqin Hu, Department of Pharmaceutical Chemistry, Ernest Mario School of Pharmacy, Rutgers, The State University of New Jersey, 160 Frelinghuysen Road, Piscataway, NJ 08854, USA; e-mail: LongHu{at}rutgers.edu; fax: (732) 445-6312.
Abbreviations: Ephs, Eph receptors; RTK, receptor tyrosine kinase; SPR, surface plasmon resonance; RU, response unit; ECD, extracellular domain; EDC, N-ethyl-N'-(dimethylaminopropyl)carbodiimide; NHS, N-hydroxysuccinimide.
Article and publication are at http://www.proteinscience.org/cgi/doi/10.1110/ps.062608807.
| Acknowledgments |
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