Data Supplement

Topology prediction for helical transmembrane proteins.

Files in this Data Supplement:

• Rost.txt - Description of supplementary files.
• Ali.txt - Ali.txt Predictions of HTM location and topology for all 129 Haemophilus influenzae proteins for which HTM's were predicted based on alignments. Note: in total for 332 of the 1616 H.i. proteins HTM's were predicted.
• Blind.txt - Double-blind set of 48 proteins: observed and predicted HTM locations and topology
• Cross.txt - Cross-validation set of 83 proteins: observed and predicted HTM locations and topology.
• NoAli.txt - Predictions of HTM location and topology for all 203 Haemophilus influenzae proteins for which HTM's were predicted based on single-sequences. Note: in total for 332 of the 1616 H.i. proteins HTM's were predicted.