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University of Pittsburgh School of Medicine, Division of Infectious Diseases, Pittsburgh, Pennsylvania 15261, USA
(RECEIVED March 8, 2005; FINAL REVISION April 13, 2005; ACCEPTED April 17, 2005)
The first pre-steady-state kinetic analysis of the stereo-selective incorporation of Rp- and Sp-isomers of thymidine-5'-O-1-thiotriphosphate (TTP
S) by HIV-1 reverse transcriptase (RT) is reported. Rates of polymerization (kpol), apparent dissociation constants (Kd), and substrate specificities (kpol/Kd) were measured for TTP, Rp-TTP
S, and Sp-TTP
S in the presence of Mg2+, Mn2+, and Co2+. HIV-1 RT exhibits a strong preference to incorporate Sp-TTP
S over Rp-TTP
S in the presence of Mg2+; however, this stereo-selective preference was decreased when Mg2+ was replaced with Mn2+ and Co2+. Furthermore, HIV-1 RT exhibited no phosphorothioate elemental effects for the incorporation of Sp-TTP
S, but large elemental effects were calculated for Rp-TTP
S for each of the metals tested. These results are discussed in relation to our current understanding of the RT active-site structure and the mechanism of DNA synthesis.
Keywords: HIV-1; reverse transcriptase; DNA polymerization; stereo-selectivity; pre-steady-state; elemental effect
Article published online ahead of print. Article and publication date are at http://www.proteinscience.org/cgi/doi/10.1110/ps.051445605.
Reprint requests to: Nicolas Sluis-Cremer, University of Pittsburgh School of Medicine, Division of Infectious Diseases, S817 Scaife Hall, 3550 Terrace Street, Pittsburgh, PA 15261, USA; e-mail: CremerN{at}dom.pitt.edu; fax: (412) 648-8521.
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