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Published online before print July 5, 2006
Protein Science, DOI: 10.1110/ps.062264006
Copyright © 2006 The Protein Society
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Characterization of the native and fibrillar conformation of the human N{alpha}-acetyltransferase ARD1

Nuria Sánchez-Puig1, and Alan R. Fersht

Centre for Protein Engineering, Medical Research Council, CB2 2QH Cambridge, United Kingdom

(RECEIVED April 3, 2006; FINAL REVISION May 17, 2006; ACCEPTED May 17, 2006)

ARD1 (arrest-defective protein 1), together with NAT1 (N-acetyltransferase protein 1), is part of the major N{alpha}-acetyltransferase complex in eukaryotes responsible for {alpha}-acetylation of proteins and peptides. Protein acetylation has been implicated in gene expression regulation and protein–protein interaction. We characterized the native folded and misfolded conformation of hARD1. Structural characterization of native hARD1 using size exclusion chromatography, circular dichroism, and fluorescence spectroscopy shows the protein consists of a compact globular region comprising two thirds of the protein and a flexible unstructured C terminus. In addition, hARD1 forms protofilaments under physiological conditions of pH and temperature, as judged by electron microscopy and staining with the dyes Congo red and thioflavin T. The process is accelerated by thermal denaturation and high protein concentrations. Limited proteolysis of aggregated hARD1 revealed a resistant fragment whose sequence matched a region contained within the acetyl transferase domain.

Keywords: ARD1; protofilaments; amyloid fibers


1 Present addresses: Laboratory of Molecular Biology, Medical Research Council, Hills Road, CB2 2QH Cambridge, United Kingdom; Department of Haematology, Cambridge Institute for Medical Research, Cambridge University, Hills Road, CB2 2XY Cambridge, United Kingdom.

Reprint requests to: Alan R. Fersht, Centre for Protein Engineering, Medical Research Council, Hills Road, CB2 2QH Cambridge, United Kingdom; e-mail: arf25{at}cam.ac.uk; fax: +44-1223-402140.

Article published online ahead of print. Article and publication date are at http://www.proteinscience.org/cgi/doi/10.1110/ps.062264006.


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