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Structure and function of Rv0130, a conserved hypothetical protein from Mycobacterium tuberculosis

Department of Cell and Molecular Biology, Uppsala University, Biomedical Center, SE-751 24 Uppsala, Sweden

(RECEIVED April 27, 2006; FINAL REVISION July 5, 2006; ACCEPTED July 5, 2006)

A large fraction of the Mycobacterium tuberculosis genome codes for proteins of unknown function. We here report the structure of one of these proteins, Rv0130, solved to a resolution of 1.8 Å. The Rv0130 monomer features a single hotdog fold composed of a highly curved -sheet on top of a long and a short -helix. Two monomers in turn pack to form a double-hotdog-folded homodimer, similar to a large group of enzymes that use thiol esters as substrates. Rv0130 was found to contain a highly conserved R-specific hydratase motif buried deeply between the two monomers. Our biochemical studies show that the protein is able to hydrate a short trans-2-enoyl-coenzyme A moiety with a k_cat of 1.1 x 10² sec^–1. The importance of the side chains of D40 and H45 for hydratase activity is demonstrated by site-directed mutagenesis. In contrast to many hotdog-folded proteins, a proline residue distorts the central helix of Rv0130. This distortion allows the creation of a long, curved tunnel, similar to the substrate-binding channels of long-chain eukaryotic hydratase 2 enzymes.

Keywords: Rv0130; Mycobacterium tuberculosis; hydratase; hotdog fold; crystal structure

Article published online ahead of print. Article and publication date are at http://www.proteinscience.org/cgi/doi/10.1110/ps.062309306.

Abbreviations: CoA, coenzyme A; DHD, double hotdog; LALI RMSD, root-mean-square distance; SeMet, seleno-methionine; SHD, single hotdog; TB, tuberculosis.

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