ARTICLES:

Julie Dam and Arnaud Blondel

Effect of multiple symmetries on the association of R67 DHFR subunits bearing interfacial complementing mutations
Protein Sci 2004 13: 1-14. [Abstract] [Full Text] [Supplemental Research Data]  

Jonathan M. Dugan and Russ B. Altman

Using surface envelopes for discrimination of molecular models
Protein Sci 2004 13: 15-24. [Abstract] [Full Text]  

D. Kuchnir Fygenson, Daniel J. Needleman, and Kim Sneppen

Variability-based sequence alignment identifies residues responsible for functional differences in and ß tubulin
Protein Sci 2004 13: 25-31. [Abstract] [Full Text]  

Teuku M. Iqbalsyah and Andrew J. Doig

Effect of the N3 residue on the stability of the -helix
Protein Sci 2004 13: 32-39. [Abstract] [Full Text]  

Hyunbum Jang, Carol K. Hall, and Yaoqi Zhou

Thermodynamics and stability of a ß-sheet complex: Molecular dynamics simulations on simplified off-lattice protein models
Protein Sci 2004 13: 40-53. [Abstract] [Full Text]  

Bino John and Andrej Sali

Detection of homologous proteins by an intermediate sequence search
Protein Sci 2004 13: 54-62. [Abstract] [Full Text]  

Manca Kenig, Selma Berbic, Aida Krijestorac, Louise Kroon-Zitko, Magda Tusek, Marusa Pompe-Novak, and Eva Zerovnik

Differences in aggregation properties of three site-specific mutants of recombinant human stefin B
Protein Sci 2004 13: 63-70. [Abstract] [Full Text]  

Predrag Radivojac, Zoran Obradovic, David K. Smith, Guang Zhu, Slobodan Vucetic, Celeste J. Brown, J. David Lawson, and A. Keith Dunker

Protein flexibility and intrinsic disorder
Protein Sci 2004 13: 71-80. [Abstract] [Full Text] [Supplemental Research Data]  

Susana A. Sánchez, Juan E. Brunet, David M. Jameson, Rosalba Lagos, and Octavio Monasterio

Tubulin equilibrium unfolding followed by time-resolved fluorescence and fluorescence correlation spectroscopy
Protein Sci 2004 13: 81-88. [Abstract] [Full Text]  

Hana Sanderová, Marta Hulková, Petr Malon, Markéta Kepková, and Jirí Jonák

Thermostability of multidomain proteins: Elongation factors EF-Tu from Escherichia coli and Bacillus stearothermophilus and their chimeric forms
Protein Sci 2004 13: 89-99. [Abstract] [Full Text]  

Narasimha Sreerama and Robert W. Woody

On the analysis of membrane protein circular dichroism spectra
Protein Sci 2004 13: 100-112. [Abstract] [Full Text] [Supplemental Research Data]  

Guido Tiana, Fabio Simona, Giacomo M.S. De Mori, Ricardo A. Broglia, and Giorgio Colombo

Understanding the determinants of stability and folding of small globular proteins from their energetics
Protein Sci 2004 13: 113-124. [Abstract] [Full Text]  

Nobuhiko Tokuriki, Masataka Kinjo, Shigeru Negi, Masaru Hoshino, Yuji Goto, Itaru Urabe, and Tetsuya Yomo

Protein folding by the effects of macromolecular crowding
Protein Sci 2004 13: 125-133. [Abstract] [Full Text]  

Keisuke Usui, Noriyuki Ishii, Yutaka Kawarabayasi, and Masafumi Yohda

Expression and biochemical characterization of two small heat shock proteins from the thermoacidophilic crenarchaeon Sulfolobus tokodaii strain 7
Protein Sci 2004 13: 134-144. [Abstract] [Full Text] [Supplemental Research Data]  

Kathleen Aertgeerts, Sheng Ye, Lihong Shi, Sridhar G. Prasad, Darbi Witmer, Ellen Chi, Bi-Ching Sang, Robert A. Wijnands, David R. Webb, and Ronald V. Swanson

N-linked glycosylation of dipeptidyl peptidase IV (CD26): Effects on enzyme activity, homodimer formation, and adenosine deaminase binding
Protein Sci 2004 13: 145-154. [Abstract] [Full Text]  

Julian Adams, Zhi-Ping Chen, Bryce J.W. Van Denderen, Craig J. Morton, Michael W. Parker, Lee A. Witters, David Stapleton, and Bruce E. Kemp

Intrasteric control of AMPK via the ₁ subunit AMP allosteric regulatory site
Protein Sci 2004 13: 155-165. [Abstract] [Full Text]  

Abel Baerga-Ortiz, Simon Bergqvist, Jeffrey G. Mandell, and Elizabeth A. Komives

Two different proteins that compete for binding to thrombin have opposite kinetic and thermodynamic profiles
Protein Sci 2004 13: 166-176. [Abstract] [Full Text]  

Wei Cao, Clay Bracken, Neville R. Kallenbach, and Min Lu

Helix formation and the unfolded state of a 52-residue helical protein
Protein Sci 2004 13: 177-189. [Abstract] [Full Text] [Supplemental Research Data]  

Daniel R. Caffrey, Shyamal Somaroo, Jason D. Hughes, Julian Mintseris, and Enoch S. Huang

Are protein–protein interfaces more conserved in sequence than the rest of the protein surface?
Protein Sci 2004 13: 190-202. [Abstract] [Full Text]  

Stephen J. Demarest, Songpon Deechongkit, H. Jane Dyson, Ronald M. Evans, and Peter E. Wright

Packing, specificity, and mutability at the binding interface between the p160 coactivator and CREB-binding protein
Protein Sci 2004 13: 203-210. [Abstract] [Full Text]  

Hao Fan and Alan E. Mark

Refinement of homology-based protein structures by molecular dynamics simulation techniques
Protein Sci 2004 13: 211-220. [Abstract] [Full Text]  

Gary Kleiger, Ekaterina M. Panina, Parag Mallick, and David Eisenberg

PFIT and PFRIT: Bioinformatic algorithms for detecting glycosidase function from structure and sequence
Protein Sci 2004 13: 221-229. [Abstract] [Full Text]  

Brian Søgaard Laursen, Anne Cecillie Kjærgaard, Kim Kusk Mortensen, David W. Hoffman, and Hans Uffe Sperling-Petersen

The N-terminal domain (IF2N) of bacterial translation initiation factor IF2 is connected to the conserved C-terminal domains by a flexible linker
Protein Sci 2004 13: 230-239. [Abstract] [Full Text]  

Orna Man, Yoav Gilad, and Doron Lancet

Prediction of the odorant binding site of olfactory receptor proteins by human–mouse comparisons
Protein Sci 2004 13: 240-254. [Abstract] [Full Text] [Supplemental Research Data]  

Larissa M. Podust, Horacio Bach, Youngchang Kim, David C. Lamb, Miharu Arase, David H. Sherman, Steven L. Kelly, and Michael R. Waterman

Comparison of the 1.85 Å structure of CYP154A1 from Streptomyces coelicolor A3(2) with the closely related CYP154C1 and CYPs from antibiotic biosynthetic pathways
Protein Sci 2004 13: 255-268. [Abstract] [Full Text] [Supplemental Research Data]  

Paulene M. Quigley, Konstantin Korotkov, François Baneyx, and Wim G.J. Hol

A new native EcHsp31 structure suggests a key role of structural flexibility for chaperone function
Protein Sci 2004 13: 269-277. [Abstract] [Full Text]  

Jessica Shapiro and Douglas Brutlag

FoldMiner: Structural motif discovery using an improved superposition algorithm
Protein Sci 2004 13: 278-294. [Abstract] [Full Text]  

FOR THE RECORD:

Preeti Mehta, Krishnamohan Katta, and Sankaran Krishnaswamy

HNH family subclassification leads to identification of commonality in the His-Me endonuclease superfamily
Protein Sci 2004 13: 295-300. [Abstract] [Full Text] [Supplemental Research Data]  

Joseph J. Rasimas, Paula A. Dalessio, Ira J. Ropson, Anthony E. Pegg, and Michael G. Fried

Active-site alkylation destabilizes human O⁶-alkylguanine DNA alkyltransferase
Protein Sci 2004 13: 301-305. [Abstract] [Full Text]  

ERRATUM:

CORRECTION
Protein Sci 2004 13: 306. [Full Text]  

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