Protein Science -- Table of Contents (February 2004, 13 [2])

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Martha M. Teeter: Myoglobin cavities provide interior ligand pathway
Protein Sci 2004 13: 313-318. [Abstract] [Full Text]

Aoneng Cao, Daoying Hu, and Luhua Lai: Formation of amyloid fibrils from fully reduced hen egg white lysozyme
Protein Sci 2004 13: 319-324. Published in Advance January 10, 2004, 10.1110/ps.03183404 [Abstract] [Full Text]

Erin L. Cunningham and David A. Agard: Disabling the folding catalyst is the last critical step in ${alpha}$ -lytic protease folding
Protein Sci 2004 13: 325-331. [Abstract] [Full Text]

Azeem Hasan, Jiong Yu, David L. Smith, and Jean B. Smith: Thermal stability of human ${alpha}$ -crystallins sensed by amide hydrogen exchange
Protein Sci 2004 13: 332-341. [Abstract] [Full Text]

Astrid Jung, Christian Bamann, Werner Kremer, Hans Robert Kalbitzer, and Eike Brunner: High-temperature solution NMR structure of TmCsp
Protein Sci 2004 13: 342-350. [Abstract] [Full Text]

Gelena T. Kilosanidze, Alexey S. Kutsenko, Natalia G. Esipova, and Vladimir G. Tumanyan: Analysis of forces that determine helix formation in ${alpha}$ -proteins
Protein Sci 2004 13: 351-357. [Abstract] [Full Text]

Kai Leonhard, John M. Prausnitz, and Clayton J. Radke: Solvent–amino acid interaction energies in three-dimensional-lattice Monte Carlo simulations of a model 27-mer protein: Folding thermodynamics and kinetics
Protein Sci 2004 13: 358-369. [Abstract] [Full Text]

Christoph Scheich, Frank H. Niesen, Robert Seckler, and Konrad Büssow: An automated in vitro protein folding screen applied to a human dynactin subunit
Protein Sci 2004 13: 370-380. [Abstract] [Full Text]

Stephanie M.E. Truhlar, Erin L. Cunningham, and David A. Agard: The folding landscape of Streptomyces griseus protease B reveals the energetic costs and benefits associated with evolving kinetic stability
Protein Sci 2004 13: 381-390. Published in Advance January 10, 2004, 10.1110/ps.03336804 [Abstract] [Full Text] [Supplemental Research Data]

Chi Zhang, Song Liu, and Yaoqi Zhou: Accurate and efficient loop selections by the DFIRE-based all-atom statistical potential
Protein Sci 2004 13: 391-399. [Abstract] [Full Text] [Supplemental Research Data]

Chi Zhang, Song Liu, Hongyi Zhou, and Yaoqi Zhou: An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state
Protein Sci 2004 13: 400-411. [Abstract] [Full Text]

Kathleen Aertgeerts, Sheng Ye, Mike G. Tennant, Michelle L. Kraus, Joe Rogers, Bi-Ching Sang, Robert J. Skene, David R. Webb, and G. Sridhar Prasad: Crystal structure of human dipeptidyl peptidase IV in complex with a decapeptide reveals details on substrate specificity and tetrahedral intermediate formation
Protein Sci 2004 13: 412-421. Published in Advance January 10, 2004, 10.1110/ps.03460604 [Abstract] [Full Text]

Colin D. Bingle, Elizabeth E. LeClair, Suzanne Havard, Lynne Bingle, Paul Gillingham, and C. Jeremy Craven: Phylogenetic and evolutionary analysis of the PLUNC gene family
Protein Sci 2004 13: 422-430. [Abstract] [Full Text] [Supplemental Research Data]

Lin Chen, Chandrashekhara Manithody, Likui Yang, and Alireza R. Rezaie: Zymogenic and enzymatic properties of the 70–80 loop mutants of factor X/Xa
Protein Sci 2004 13: 431-442. [Abstract] [Full Text]

Olga V. Kalinina, Andrey A. Mironov, Mikhail S. Gelfand, and Aleksandra B. Rakhmaninova: Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families
Protein Sci 2004 13: 443-456. [Abstract] [Full Text]

Ryuta Kanai, Keiko Haga, Toshihiko Akiba, Kunio Yamane, and Kazuaki Harata: Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: Substrate binding and arrangement of the catalytic site
Protein Sci 2004 13: 457-465. [Abstract] [Full Text]

Michael Kothe and Susan G. Powers-Lee: Nucleotide recognition in the ATP-grasp protein carbamoyl phosphate synthetase
Protein Sci 2004 13: 466-475. Published in Advance January 10, 2004, 10.1110/ps.03416804 [Abstract] [Full Text]

Hortense Mazon, Olivier Marcillat, Eric Forest, and Christian Vial: Hydrogen/deuterium exchange studies of native rabbit MM-CK dynamics
Protein Sci 2004 13: 476-486. [Abstract] [Full Text] [Supplemental Research Data]

Rajamanickam Murugan and Shymalava Mazumdar: A simple formalism on dynamics of proteins on potential energy landscapes
Protein Sci 2004 13: 487-493. [Abstract] [Full Text]

Nisha Palackal, Yali Brennan, Walter N. Callen, Paul Dupree, Gerhard Frey, Florence Goubet, Geoffrey P. Hazlewood, Shaun Healey, Young E. Kang, Keith A. Kretz, Edd Lee, Xuqiu Tan, Geoffery L. Tomlinson, John Verruto, Vicky W.K. Wong, Eric J. Mathur, Jay M. Short, Dan E. Robertson, and Brian A. Steer: An evolutionary route to xylanase process fitness
Protein Sci 2004 13: 494-503. Published in Advance January 10, 2004, 10.1110/ps.03333504 [Abstract] [Full Text]

Gulsah Sanli, Scott Banta, Stephen Anderson, and Michael Blaber: Structural alteration of cofactor specificity in Corynebacterium 2,5-diketo-D-gluconic acid reductase
Protein Sci 2004 13: 504-512. Published in Advance January 10, 2004, 10.1110/ps.03450704 [Abstract] [Full Text]

Joanna Trylska, Pawel Grochowski, and J. Andrew McCammon: The role of hydrogen bonding in the enzymatic reaction catalyzed by HIV-1 protease
Protein Sci 2004 13: 513-528. [Abstract] [Full Text]

Nicole A. Webb, Anne M. Mulichak, Joseph S. Lam, Heather L. Rocchetta, and R. Michael Garavito: Crystal structure of a tetrameric GDP-D-mannose 4,6-dehydratase from a bacterial GDP-D-rhamnose biosynthetic pathway
Protein Sci 2004 13: 529-539. [Abstract] [Full Text]

Michael Gensheimer and Arcady Mushegian: Chalcone isomerase family and fold: No longer unique to plants
Protein Sci 2004 13: 540-544. Published in Advance January 10, 2004, 10.1110/ps.03395404 [Abstract] [Full Text]

Takuma Kasai, Makoto Inoue, Seizo Koshiba, Takashi Yabuki, Masaaki Aoki, Emi Nunokawa, Eiko Seki, Takayoshi Matsuda, Natsuko Matsuda, Yasuko Tomo, Mikako Shirouzu, Takaho Terada, Naomi Obayashi, Hiroaki Hamana, Naoko Shinya, Ayako Tatsuguchi, Satoko Yasuda, Mayumi Yoshida, Hiroshi Hirota, Yo Matsuo, Kazutoshi Tani, Harukazu Suzuki, Takahiro Arakawa, Piero Carninci, Jun Kawai, Yoshihide Hayashizaki, Takanori Kigawa, and Shigeyuki Yokoyama: Solution structure of a BolA-like protein from Mus musculus
Protein Sci 2004 13: 545-548. Published in Advance January 10, 2004, 10.1110/ps.03401004 [Abstract] [Full Text]

Deyou Zheng, James M. Aramini, and Gaetano T. Montelione: Validation of helical tilt angles in the solution NMR structure of the Z domain of Staphylococcal protein A by combined analysis of residual dipolar coupling and NOE data
Protein Sci 2004 13: 549-554. Published in Advance January 10, 2004, 10.1110/ps.03351704 [Abstract] [Full Text]

Weiming Ruan, Eric Lindner, and Dieter Langosch: The interface of a membrane-spanning leucine zipper mapped by asparagine-scanning mutagenesis
Protein Sci 2004 13: 555-559. [Abstract] [Full Text]