Protein Science -- Table of Contents (August 2004, 13 [8])

REVIEWS:

Swarnalatha Y. Reddy and Thomas C. Bruice: Determination of enzyme mechanisms by molecular dynamics: Studies on quinoproteins, methanol dehydrogenase, and soluble glucose dehydrogenase
Protein Sci 2004 13: 1965-1978. [Abstract] [Full Text]

Yigong Shi: Caspase activation, inhibition, and reactivation: A mechanistic view
Protein Sci 2004 13: 1979-1987. [Abstract] [Full Text]

Leigh A. Plesniak, Jonathan I. Parducho, Angie Ziebart, Bernhard H. Geierstanger, Jennifer A. Whiles, Guiseppe Melacini, and Patricia A. Jennings: Orientation and helical conformation of a tissue-specific hunter-killer peptide in micelles
Protein Sci 2004 13: 1988-1996. [Abstract] [Full Text]

Mahalaxmi Aburi and Paul E. Smith: Modeling and simulation of the human ${delta}$ opioid receptor
Protein Sci 2004 13: 1997-2008. Published in Advance July 6, 2004, 10.1110/ps.04720304 [Abstract] [Full Text]

Patricia Amara, Laurence Serre, Bertrand Castaing, and Aline Thomas: Insights into the DNA repair process by the formamidopyrimidine-DNA glycosylase investigated by molecular dynamics
Protein Sci 2004 13: 2009-2021. [Abstract] [Full Text]

Valerie Booth, Ian Clark-Lewis, and Brian D. Sykes: NMR structure of CXCR3 binding chemokine CXCL11 (ITAC)
Protein Sci 2004 13: 2022-2028. [Abstract] [Full Text]

James M. Gruschus, Lois E. Greene, Evan Eisenberg, and James A. Ferretti: Experimentally biased model structure of the Hsc70/auxilin complex: Substrate transfer and interdomain structural change
Protein Sci 2004 13: 2029-2044. [Abstract] [Full Text]

Abhas Gupta, Herman W.T. Van Vlijmen, and Juswinder Singh: A classification of disulfide patterns and its relationship to protein structure and function
Protein Sci 2004 13: 2045-2058. [Abstract] [Full Text]

Natarajan Kannan and Andrew F. Neuwald: Evolutionary constraints associated with functional specificity of the CMGC protein kinases MAPK, CDK, GSK, SRPK, DYRK, and CK2 ${alpha}$
Protein Sci 2004 13: 2059-2077. [Abstract] [Full Text]

Christofer Lendel, Vildan Dincbas-Renqvist, Alexander Flores, Elisabet Wahlberg, Jakob Dogan, Per-Åke Nygren, and Torleif Härd: Biophysical characterization of Z_SPA-1—A phage-display selected binder to protein A
Protein Sci 2004 13: 2078-2088. Published in Advance July 6, 2004, 10.1110/ps.04728604 [Abstract] [Full Text]

Nobukazu Nameki, Misao Yoneyama, Seizo Koshiba, Naoya Tochio, Makoto Inoue, Eiko Seki, Takayoshi Matsuda, Yasuko Tomo, Takushi Harada, Kohei Saito, Naohiro Kobayashi, Takashi Yabuki, Masaaki Aoki, Emi Nunokawa, Natsuko Matsuda, Noriko Sakagami, Takaho Terada, Mikako Shirouzu, Mayumi Yoshida, Hiroshi Hirota, Takashi Osanai, Akiko Tanaka, Takahiro Arakawa, Piero Carninci, Jun Kawai, Yoshihide Hayashizaki, Kengo Kinoshita, Peter Güntert, Takanori Kigawa, and Shigeyuki Yokoyama: Solution structure of the RWD domain of the mouse GCN2 protein
Protein Sci 2004 13: 2089-2100. [Abstract] [Full Text]

John L. Newman, Eric W. Butcher, Dipti T. Patel, Yelena Mikhaylenko, and Michael F. Summers: Flexibility in the P2 domain of the HIV-1 Gag polyprotein
Protein Sci 2004 13: 2101-2107. Published in Advance July 6, 2004, 10.1110/ps.04614804 [Abstract] [Full Text]

Alison Park, Heather K. Lamb, Charlie Nichols, Jonathan D. Moore, Katherine A. Brown, Alan Cooper, Ian G. Charles, David K. Stammers, and Alastair R. Hawkins: Biophysical and kinetic analysis of wild-type and site-directed mutants of the isolated and native dehydroquinate synthase domain of the AROM protein
Protein Sci 2004 13: 2108-2119. [Abstract] [Full Text]

Michael Petukhov, Georgy Rychkov, Leonid Firsov, and Luis Serrano: H-bonding in protein hydration revisited
Protein Sci 2004 13: 2120-2129. Published in Advance July 6, 2004, 10.1110/ps.04748404 [Abstract] [Full Text]

Grant S. Shackelford, Catherine A. Regni, and Lesa J. Beamer: Evolutionary trace analysis of the ${alpha}$ -D-phosphohexomutase superfamily
Protein Sci 2004 13: 2130-2138. Published in Advance July 6, 2004, 10.1110/ps.04801104 [Abstract] [Full Text]

Frank Shewmaker, Michael J. Kerner, Manajit Hayer-Hartl, Gracjana Klein, Costa Georgopoulos, and Samuel J. Landry: A mobile loop order–disorder transition modulates the speed of chaperonin cycling
Protein Sci 2004 13: 2139-2148. Published in Advance July 6, 2004, 10.1110/ps.04773204 [Abstract] [Full Text] [Supplemental Research Data]

Sukjoon Yoon and William J. Welsh: Detecting hidden sequence propensity for amyloid fibril formation
Protein Sci 2004 13: 2149-2160. [Abstract] [Full Text]

Qi Zhang, Chunyang Cao, Zhi-Qiang Wang, Yun-Hua Wang, Houming Wu, and Zhong-Xian Huang: The comparative study on the solution structures of the oxidized bovine microsomal cytochrome b₅ and mutant V45H
Protein Sci 2004 13: 2161-2169. [Abstract] [Full Text]

Masafumi Arai, Kosuke Okumura, Masanobu Satake, and Toshio Shimizu: Proteome-wide functional classification and identification of prokaryotic transmembrane proteins by transmembrane topology similarity comparison
Protein Sci 2004 13: 2170-2183. [Abstract] [Full Text]

Anant Narayan Bhatt, M. Yahiya Khan, and Vinod Bhakuni: The C-terminal domain of dimeric serine hydroxymethyltransferase plays a key role in stabilization of the quaternary structure and cooperative unfolding of protein: Domain swapping studies with enzymes having high sequence identity
Protein Sci 2004 13: 2184-2195. [Abstract] [Full Text]

Yun-Ru Chen and A. Clay Clark: Kinetic traps in the folding/unfolding of procaspase-1 CARD domain
Protein Sci 2004 13: 2196-2206. [Abstract] [Full Text]

Mark E. Harder, Max L. Deinzer, Mark E. Leid, and Michael I. Schimerlik: Global analysis of three-state protein unfolding data
Protein Sci 2004 13: 2207-2222. [Abstract] [Full Text]

Melissa S. Kosinski-Collins, Shannon L. Flaugh, and Jonathan King: Probing folding and fluorescence quenching in human ${gamma}$ D crystallin Greek key domains using triple tryptophan mutant proteins
Protein Sci 2004 13: 2223-2235. [Abstract] [Full Text]

Gopalraj Periyannan, Patrick J. Shaw, Tara Sigdel, and Michael W. Crowder: In vivo folding of recombinant metallo- ${beta}$ -lactamase L1 requires the presence of Zn(II)
Protein Sci 2004 13: 2236-2243. Published in Advance July 6, 2004, 10.1110/ps.04742704 [Abstract] [Full Text]

Morris M. Slutsky and E. Neil G. Marsh: Cation– ${pi}$ interactions studied in a model coiled-coil peptide
Protein Sci 2004 13: 2244-2251. Published in Advance July 6, 2004, 10.1110/ps.04702104 [Abstract] [Full Text] [Supplemental Research Data]

Matthew Devany, N. Prasad Kotharu, and Hiroshi Matsuo: Solution NMR structure of the C-terminal domain of the human protein DEK
Protein Sci 2004 13: 2252-2259. Published in Advance July 6, 2004, 10.1110/ps.04797104 [Abstract] [Full Text] [Supplemental Research Data]

Hua Cheng, Nan Shen, Jimin Pei, and Nick V. Grishin: Double-stranded DNA bacteriophage prohead protease is homologous to herpesvirus protease
Protein Sci 2004 13: 2260-2269. [Abstract] [Full Text]

Aaron K. Chamberlain and James U. Bowie: Asymmetric amino acid compositions of transmembrane ${beta}$ -strands
Protein Sci 2004 13: 2270-2274. [Abstract] [Full Text]

Joel Vandekerckhove: Handbook of proteomic methods, edited by P. Michael Conn.: 2003. Totowa, NJ: Humana Press. 524 pp. $135 (hardcover)
Protein Sci 2004 13: 2275. [Full Text]