ARTICLES:

Teaster T. Baird, Jr, William D. Wright, and Charles S. Craik

Conversion of trypsin to a functional threonine protease
Protein Sci 2006 15: 1229-1238. Published in Advance May 2, 2006, 10.1110/ps.062179006 [Abstract] [Full Text] [PDF]  

Andrij Baumketner, Summer L. Bernstein, Thomas Wyttenbach, Noel D. Lazo, David B. Teplow, Michael T. Bowers, and Joan-Emma Shea

Structure of the 21–30 fragment of amyloid -protein
Protein Sci 2006 15: 1239-1247. [Abstract] [Full Text] [PDF]  

Yong-Gang Chang, Ai-Xin Song, Yong-Guang Gao, Yan-Hong Shi, Xiao-Jing Lin, Xue-Tao Cao, Dong-Hai Lin, and Hong-Yu Hu

Solution structure of the ubiquitin-associated domain of human BMSC-UbP and its complex with ubiquitin
Protein Sci 2006 15: 1248-1259. [Abstract] [Full Text] [PDF]  

Feixia Chu, Jason C. Maynard, Gabriela Chiosis, Christopher V. Nicchitta, and Alma L. Burlingame

Identification of novel quaternary domain interactions in the Hsp90 chaperone, GRP94
Protein Sci 2006 15: 1260-1269. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Oded Danziger, Liat Shimon, and Amnon Horovitz

Glu257 in GroEL is a sensor involved in coupling polypeptide substrate binding to stimulation of ATP hydrolysis
Protein Sci 2006 15: 1270-1276. Published in Advance May 2, 2006, 10.1110/ps.062100606 [Abstract] [Full Text] [PDF]  

Jennifer L. Hearne and Roberta F. Colman

Contribution of the mu loop to the structure and function of rat glutathione transferase M1-1
Protein Sci 2006 15: 1277-1289. Published in Advance May 2, 2006, 10.1110/ps.062129506 [Abstract] [Full Text] [PDF]  

Elena Iakhiaeva, Shakhawat Hossain Bhuiyan, Jiaming Yin, and Christian Zwieb

Protein SRP68 of human signal recognition particle: Identification of the RNA and SRP72 binding domains
Protein Sci 2006 15: 1290-1302. Published in Advance May 2, 2006, 10.1110/ps.051861406 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Richard B. Jacobsen, Kenneth L. Sale, Marites J. Ayson, Petr Novak, Joohee Hong, Pamela Lane, Nichole L. Wood, Gary H. Kruppa, Malin M. Young, and Joseph S. Schoeniger

Structure and dynamics of dark-state bovine rhodopsin revealed by chemical cross-linking and high-resolution mass spectrometry
Protein Sci 2006 15: 1303-1317. [Abstract] [Full Text] [PDF]  

Andrei L. Lomize, Irina D. Pogozheva, Mikhail A. Lomize, and Henry I. Mosberg

Positioning of proteins in membranes: A computational approach
Protein Sci 2006 15: 1318-1333. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Natallia Makarava, Olga V. Bocharova, Vadim V. Salnikov, Leonid Breydo, Maighdlin Anderson, and Ilia V. Baskakov

Dichotomous versus palm-type mechanisms of lateral assembly of amyloid fibrils
Protein Sci 2006 15: 1334-1341. [Abstract] [Full Text] [PDF]  

Munia Mukherjee, Kaushik Dutta, Mark A. White, David Cowburn, and Robert O. Fox

NMR solution structure and backbone dynamics of domain III of the E protein of tick-borne Langat flavivirus suggests a potential site for molecular recognition
Protein Sci 2006 15: 1342-1355. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Tina A. Müller, Maria I. Zavodszky, Michael Feig, Leslie A. Kuhn, and Robert P. Hausinger

Structural basis for the enantiospecificities of R- and S-specific phenoxypropionate/-ketoglutarate dioxygenases
Protein Sci 2006 15: 1356-1368. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Matthieu Nouailler, Xavier Morelli, Olivier Bornet, Bernard Chetrit, Zorah Dermoun, and Françoise Guerlesquin

Solution structure of HndAc: A thioredoxin-like domain involved in the NADP-reducing hydrogenase complex
Protein Sci 2006 15: 1369-1378. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Chetan N. Patel, Virginia F. Smith, and Linda L. Randall

Characterization of three areas of interactions stabilizing complexes between SecA and SecB, two proteins involved in protein export
Protein Sci 2006 15: 1379-1386. [Abstract] [Full Text] [PDF]  

José Salud Rodríguez-Zavala, Abdellah Allali-Hassani, and Henry Weiner

Characterization of E. coli tetrameric aldehyde dehydrogenases with atypical properties compared to other aldehyde dehydrogenases
Protein Sci 2006 15: 1387-1396. [Abstract] [Full Text] [PDF]  

Julia Wirmer, Holger Berk, Raffaella Ugolini, Christina Redfield, and Harald Schwalbe

Characterization of the unfolded state of bovine -lactalbumin and comparison with unfolded states of homologous proteins
Protein Sci 2006 15: 1397-1407. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Marco Bisaglia, Alessandra Trolio, Massimo Bellanda, Elisabetta Bergantino, Luigi Bubacco, and Stefano Mammi

Structure and topology of the non-amyloid- component fragment of human -synuclein bound to micelles: Implications for the aggregation process
Protein Sci 2006 15: 1408-1416. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Julie Bonvin, Raphael A. Aponte, Maria Marcantonio, Sasha Singh, Dinesh Christendat, and Joanne L. Turnbull

Biochemical characterization of prephenate dehydrogenase from the hyperthermophilic bacterium Aquifex aeolicus
Protein Sci 2006 15: 1417-1432. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Prashen Chelikani, Philip J. Reeves, Uttam L. Rajbhandary, and H. Gobind Khorana

The synthesis and high-level expression of a ₂-adrenergic receptor gene in a tetracycline-inducible stable mammalian cell line
Protein Sci 2006 15: 1433-1440. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Yongjun Feng, Wangwang Jiao, Xinmiao Fu, and Zengyi Chang

Stepwise disassembly and apparent nonstepwise reassembly for the oligomeric RbsD protein
Protein Sci 2006 15: 1441-1448. [Abstract] [Full Text] [PDF]  

Vikas Jain, Raspudin Saleem-Batcha, Arnab China, and Dipankar Chatterji

Molecular dissection of the mycobacterial stringent response protein Rel
Protein Sci 2006 15: 1449-1464. [Abstract] [Full Text] [PDF]  

Sanjay R. Krishnaswamy, Evan R. Williams, and Jack F. Kirsch

Free energies of protein–protein association determined by electrospray ionization mass spectrometry correlate accurately with values obtained by solution methods
Protein Sci 2006 15: 1465-1475. [Abstract] [Full Text] [PDF]  

Luciana Malavolta, Marcelo R.S. Pinto, Jamile H. Cuvero, and Clóvis R. Nakaie

Interpretation of the dissolution of insoluble peptide sequences based on the acid-base properties of the solvent
Protein Sci 2006 15: 1476-1488. [Abstract] [Full Text] [PDF]  

PROTEIN STRUCTURE REPORTS:

Marco Bellinzoni, Ahmed Haouz, Martin Graña, Hélène Munier-Lehmann, William Shepard, and Pedro M. Alzari

The crystal structure of Mycobacterium tuberculosis adenylate kinase in complex with two molecules of ADP and Mg²⁺ supports an associative mechanism for phosphoryl transfer
Protein Sci 2006 15: 1489-1493. Published in Advance May 2, 2006, 10.1110/ps.062163406 [Abstract] [Full Text] [PDF]  

Akio Ebihara, Min Yao, Ryoji Masui, Isao Tanaka, Shigeyuki Yokoyama, and Seiki Kuramitsu

Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain
Protein Sci 2006 15: 1494-1499. Published in Advance May 2, 2006, 10.1110/ps.062131106 [Abstract] [Full Text] [PDF]  

Jeyanthy Eswaran, Judit É. Debreczeni, Emma Longman, Alastair J. Barr, and Stefan Knapp

The crystal structure of human receptor protein tyrosine phosphatase phosphatase domain 1
Protein Sci 2006 15: 1500-1505. Published in Advance May 2, 2006, 10.1110/ps.062128706 [Abstract] [Full Text] [PDF]  

Marina Gorelik, Vladimir V. Lunin, Tatiana Skarina, and Alexei Savchenko

Structural characterization of GntR/HutC family signaling domain
Protein Sci 2006 15: 1506-1511. Published in Advance May 2, 2006, 10.1110/ps.062146906 [Abstract] [Full Text] [PDF]  

Vladislav V. Kiselyov, Elisabeth Bock, Vladimir Berezin, and Flemming M. Poulsen

NMR structure of the first Ig module of mouse FGFR1
Protein Sci 2006 15: 1512-1515. [Abstract] [Full Text] [PDF]  

Sophie Quevillon-Cheruel, Nicolas Leulliot, Marc Graille, Karine Blondeau, Joel Janin, and Herman Van Tilbeurgh

Crystal structure of the yeast His6 enzyme suggests a reaction mechanism
Protein Sci 2006 15: 1516-1521. [Abstract] [Full Text] [PDF]  

FOR THE RECORD:

Erik J. Miller, Anne S. Meyer, and Judith Frydman

Modeling of possible subunit arrangements in the eukaryotic chaperonin TRiC
Protein Sci 2006 15: 1522-1526. Published in Advance May 2, 2006, 10.1110/ps.052001606 [Abstract] [Full Text] [PDF]  

AUTOMATED FUNCTION PREDICTION:

Iddo Friedberg, Martin Jambon, and Adam Godzik

New avenues in protein function prediction
Protein Sci 2006 15: 1527-1529. [Full Text] [PDF]  

David M. Kristensen, Brian Y. Chen, Viacheslav Y. Fofanov, R. Matthew Ward, Andreas Martin Lisewski, Marek Kimmel, Lydia E. Kavraki, and Olivier Lichtarge

Recurrent use of evolutionary importance for functional annotation of proteins based on local structural similarity
Protein Sci 2006 15: 1530-1536. Published in Advance May 2, 2006, 10.1110/ps.062152706 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan Prins, Jack Snoeyink, Wei Wang, and Alexander Tropsha

Structure-based function inference using protein family-specific fingerprints
Protein Sci 2006 15: 1537-1543. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Karin Verspoor, Judith Cohn, Susan Mniszewski, and Cliff Joslyn

A categorization approach to automated ontological function annotation
Protein Sci 2006 15: 1544-1549. Published in Advance May 2, 2006, 10.1110/ps.062184006 [Abstract] [Full Text] [PDF]  

Troy Hawkins, Stanislav Luban, and Daisuke Kihara

Enhanced automated function prediction using distantly related sequences and contextual association by PFP
Protein Sci 2006 15: 1550-1556. Published in Advance May 2, 2006, 10.1110/ps.062153506 [Abstract] [Full Text] [PDF]  

Ori Sasson, Noam Kaplan, and Michal Linial

Functional annotation prediction: All for one and one for all
Protein Sci 2006 15: 1557-1562. Published in Advance May 2, 2006, 10.1110/ps.062185706 [Abstract] [Full Text] [PDF]  

CORRECTION:

CORRECTION
Protein Sci 2006 15: 1563. [Full Text] [PDF]  

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