COMMENTARY:

Martin Blackledge

NMR provides evidence for dynamic hydrogen bonding in proteins
Protein Sci 2007 16: 1247-1248. Published in Advance June 13, 2007, 10.1110/ps.072945407 [Full Text] [PDF]  

ARTICLES:

John W. Blankenship and Philip E. Dawson

Threading a peptide through a peptide: Protein loops, rotaxanes, and knots
Protein Sci 2007 16: 1249-1256. Published in Advance June 13, 2007, 10.1110/ps.062673207 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Vincenzo De Filippis, Annamaria Draghi, Roberta Frasson, Claudio Grandi, Valeria Musi, Angelo Fontana, and Annalisa Pastore

o-Nitrotyrosine and p-iodophenylalanine as spectroscopic probes for structural characterization of SH3 complexes
Protein Sci 2007 16: 1257-1265. Published in Advance June 13, 2007, 10.1110/ps.062726807 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Jonathan M. Dugan and Russ B. Altman

Using surface envelopes to constrain molecular modeling
Protein Sci 2007 16: 1266-1273. [Abstract] [Full Text] [PDF]  

Graeme S. Garvey, Christopher J. Rocco, Jorge C. Escalante-Semerena, and Ivan Rayment

The three-dimensional crystal structure of the PrpF protein of Shewanella oneidensis complexed with trans-aconitate: Insights into its biological function
Protein Sci 2007 16: 1274-1284. Published in Advance June 13, 2007, 10.1110/ps.072801907 [Abstract] [Full Text] [PDF]  

Michael H. Godsey, George Minasov, Ludmilla Shuvalova, Joseph S. Brunzelle, Ivan I. Vorontsov, Frank R. Collart, and Wayne F. Anderson

The 2.2 Å resolution crystal structure of Bacillus cereus Nif3-family protein YqfO reveals a conserved dimetal-binding motif and a regulatory domain
Protein Sci 2007 16: 1285-1293. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Christoph Hartmann, Iris Antes, and Thomas Lengauer

IRECS: A new algorithm for the selection of most probable ensembles of side-chain conformations in protein models
Protein Sci 2007 16: 1294-1307. Published in Advance June 13, 2007, 10.1110/ps.062658307 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Trevor Huyton and Cynthia Wolberger

The crystal structure of the tumor suppressor protein pp32 (Anp32a): Structural insights into Anp32 family of proteins
Protein Sci 2007 16: 1308-1315. Published in Advance June 13, 2007, 10.1110/ps.072803507 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Margaret A. Johnson, Maurice W. Southworth, Torsten Herrmann, Lear Brace, Francine B. Perler, and Kurt Wüthrich

NMR structure of a KlbA intein precursor from Methanococcus jannaschii
Protein Sci 2007 16: 1316-1328. [Abstract] [Full Text] [PDF]  

Nenad Juranic, Elena Atanasova, John H. Streiff, Slobodan Macura, and Franklyn G. Prendergast

Solvent-induced differentiation of protein backbone hydrogen bonds in calmodulin
Protein Sci 2007 16: 1329-1337. Published in Advance June 13, 2007, 10.1110/ps.062689807 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Darcie J. Miller, Ludmilla Shuvalova, Elena Evdokimova, Alexei Savchenko, Alexander F. Yakunin, and Wayne F. Anderson

Structural and biochemical characterization of a novel Mn²⁺-dependent phosphodiesterase encoded by the yfcE gene
Protein Sci 2007 16: 1338-1348. [Abstract] [Full Text] [PDF]  

John H. Missimer, Michel O. Steinmetz, Riccardo Baron, Fritz K. Winkler, Richard A. Kammerer, Xavier Daura, and Wilfred F. van Gunsteren

Configurational entropy elucidates the role of salt-bridge networks in protein thermostability
Protein Sci 2007 16: 1349-1359. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Janusz J. Petkowski, Maksymilian Chruszcz, Matthew D. Zimmerman, Heping Zheng, Tatiana Skarina, Olena Onopriyenko, Marcin T. Cymborowski, Katarzyna D. Koclega, Alexei Savchenko, Aled Edwards, and Wladek Minor

Crystal structures of TM0549 and NE1324—two orthologs of E. coli AHAS isozyme III small regulatory subunit
Protein Sci 2007 16: 1360-1367. [Abstract] [Full Text] [PDF]  

Aaron A. Puhl, Robert J. Gruninger, Ralf Greiner, Timothy W. Janzen, Steven C. Mosimann, and L. Brent Selinger

Kinetic and structural analysis of a bacterial protein tyrosine phosphatase-like myo-inositol polyphosphatase
Protein Sci 2007 16: 1368-1378. Published in Advance June 13, 2007, 10.1110/ps.062738307 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

James B. Thoden and Hazel M. Holden

Active site geometry of glucose-1-phosphate uridylyltransferase
Protein Sci 2007 16: 1379-1388. Published in Advance June 13, 2007, 10.1110/ps.072864707 [Abstract] [Full Text] [PDF]  

Hidenori Yamada, Taro Tamada, Megumi Kosaka, Kohei Miyata, Shinya Fujiki, Masaru Tano, Masayuki Moriya, Mamoru Yamanishi, Eijiro Honjo, Hiroko Tada, Takeshi Ino, Hiroshi Yamaguchi, Junichiro Futami, Masaharu Seno, Takashi Nomoto, Tomoko Hirata, Motonobu Yoshimura, and Ryota Kuroki

‘Crystal lattice engineering,’ an approach to engineer protein crystal contacts by creating intermolecular symmetry: Crystallization and structure determination of a mutant human RNase 1 with a hydrophobic interface of leucines
Protein Sci 2007 16: 1389-1397. [Abstract] [Full Text] [PDF]  

Xiaoyan Yang, Ramakrishna Vadrevu, Ying Wu, and C. Robert Matthews

Long-range side-chain–main-chain interactions play crucial roles in stabilizing the ()₈ barrel motif of the alpha subunit of tryptophan synthase
Protein Sci 2007 16: 1398-1409. [Abstract] [Full Text] [PDF]  

Evandro Ferrada and Francisco Melo

Nonbonded terms extrapolated from nonlocal knowledge-based energy functions improve error detection in near-native protein structure models
Protein Sci 2007 16: 1410-1421. [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE  

Daniel A.P. Gutmann, Eiichi Mizohata, Simon Newstead, Sebastian Ferrandon, Peter J.F. Henderson, Hendrik W. van Veen, and Bernadette Byrne

A high-throughput method for membrane protein solubility screening: The ultracentrifugation dispersity sedimentation assay
Protein Sci 2007 16: 1422-1428. Published in Advance June 13, 2007, 10.1110/ps.072759907 [Abstract] [Full Text] [PDF]  

Tomoo Ohashi, Stephane D. Galiacy, Gina Briscoe, and Harold P. Erickson

An experimental study of GFP-based FRET, with application to intrinsically unstructured proteins
Protein Sci 2007 16: 1429-1438. [Abstract] [Full Text] [PDF]  

Ruth L. Saxl, Gladys F. Maley, Charles R. Hauer, Robert Maccoll, Liming Changchien, and Frank Maley

Significance of mutations on the structural perturbation of thymidylate synthase: Implications for their involvement in subunit exchange
Protein Sci 2007 16: 1439-1448. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Yinghao Wu, Mingyang Lu, Mingzhi Chen, Jialin Li, and Jianpeng Ma

OPUS-Ca: A knowledge-based potential function requiring only C positions
Protein Sci 2007 16: 1449-1463. [Abstract] [Full Text] [PDF]  

PROTEIN STRUCTURE REPORTS:

Emma Åhrman, Wietske Lambert, J. Andrew Aquilina, Carol V. Robinson, and Cecilia Sundby Emanuelsson

Chemical cross-linking of the chloroplast localized small heat-shock protein, Hsp21, and the model substrate citrate synthase
Protein Sci 2007 16: 1464-1478. Published in Advance June 13, 2007, 10.1110/ps.072831607 [Abstract] [Full Text] [PDF]  

Norberto B. de la Cruz, Francis C. Peterson, Betsy L. Lytle, and Brian F. Volkman

Solution structure of a membrane-anchored ubiquitin-fold (MUB) protein from Homo sapiens
Protein Sci 2007 16: 1479-1484. Published in Advance June 13, 2007, 10.1110/ps.072834007 [Abstract] [Full Text] [PDF]  

Natasza E. Ziólkowska, Shilpa R. Shenoy, Barry R. O'Keefe, and Alexander Wlodawer

Crystallographic studies of the complexes of antiviral protein griffithsin with glucose and N-acetylglucosamine
Protein Sci 2007 16: 1485-1489. Published in Advance June 13, 2007, 10.1110/ps.072889407 [Abstract] [Full Text] [PDF]  

FOR THE RECORD:

Yanan He, Yihong Chen, David A. Rozak, Philip N. Bryan, and John Orban

An artificially evolved albumin binding module facilitates chemical shift epitope mapping of GA domain interactions with phylogenetically diverse albumins
Protein Sci 2007 16: 1490-1494. Published in Advance June 13, 2007, 10.1110/ps.072799507 [Abstract] [Full Text] [PDF]  

Marcus Jäger, Houbi Nguyen, Maria Dendle, Martin Gruebele, and Jeffery W. Kelly

Influence of hPin1 WW N-terminal domain boundaries on function, protein stability, and folding
Protein Sci 2007 16: 1495-1501. [Abstract] [Full Text] [PDF]  

Aiwu Zhou

Functional structure of the somatomedin B domain of vitronectin
Protein Sci 2007 16: 1502-1508. Published in Advance June 13, 2007, 10.1110/ps.072819107 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

IN MEMORIAM:

John Lee

Richard V. Eck (1922–2006): Bioinformatics: In the beginning
Protein Sci 2007 16: 1509-1510. [Full Text] [PDF]  

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