Journal Issue - Volume 1 Issue 11 (November 1992)
John Edsall and protein science
- David Eisenberg
- Published in Wiley Interscience on Dec 31, 2008
- DOI: 10.1002/pro.5560011101 (p 1399-1401)
Effects of DNA binding and metal substitution on the dynamics of the GAL4 DNA‐binding domain as studied by amide proton exchange
- Ted Mau, James D. Baleja, Gerhard Wagner
- Published in Wiley Interscience on Dec 31, 2008
- DOI: 10.1002/pro.5560011102 (p 1403-1412)
Abstract Backbone amide proton exchange rates in the DNA‐binding domain of GAL4 have been determined using 1H–15N heteronuclear correlation NMR spectroscopy. Three forms of the protein were studied — the native Zn‐containing protein, the Cd‐substituted protein, and a Zn‐GAL4/DNA complex. Exchange rates in the Zn‐containing protein are significantly slower than in the Cd‐substituted protein. This shows that Cd‐substituted GAL4 is destabilized...
Structure of the oxidized long‐chain flavodoxin from anabaena 7120 at 2 å resolution
- S. T. Rao, Fathieh Shaffie, Carlos Yu, Kenneth A. Satyshur, Brian J. Stockman, John L. Markley, M. Sundaralingam
- Published in Wiley Interscience on Dec 31, 2008
- DOI: 10.1002/pro.5560011103 (p 1413-1427)
Abstract The structure of the long‐chain flavodoxin from the photosynthetic cyanobacterium Anabaena 7120 has been determined at 2 å resolution by the molecular replacement method using the atomic coordinates of the long‐chain flavodoxin from Anacystis nidulans. The structure of a third long‐chain flavodoxin from Chondrus crispus has recently been reported. Crystals of oxidized A. 7120 flavodoxin belong to the monoclinic space group P21 with a = 48.0, b =...
Electronic and vibrational spectroscopy of the cytochrome c: Cytochrome c oxidase complexes from bovine and Paracoccus denitrificans
- Stephen R. Lynch, Robert A. Copeland
- Published in Wiley Interscience on Dec 31, 2008
- DOI: 10.1002/pro.5560011104 (p 1428-1434)
Abstract The 1:1 complex between horse heart cytochrome c and bovine cytochrome c oxidase, and between yeast cytochrome c and Paracoccus denitrificans cytochrome c oxidase have been studied by a combination of second derivative absorption, circular dichroism (CD), and resonance Raman spectroscopy. The second derivative absorption and CD spectra reveal changes in the electronic transitions of cytochrome a upon complex formation. These results could reflect...
Arginine 54 in the active site of escherichia coli aspartate transcarbamoylase is critical for catalysis: A site‐specific mutagenesis, NMR, and X‐ray crystallographic study
- Jeffrey W. Stebbins, Diane E. Robertson, Mary F. Roberts, Raymond C. Stevens, William N. Lipscomb, Evan R. Kantrowitz
- Published in Wiley Interscience on Dec 31, 2008
- DOI: 10.1002/pro.5560011105 (p 1435-1446)
Abstract The replacement of Arg‐54 by Ala in the active site of Escherichia coli aspartate transcarbamoylase causes a 17,000‐fold loss of activity but does not significantly influence the binding of substrates or substrate analogs (Stebbins, J.W., Xu, W., & Kantrowitz, E.R., 1989, Biochemistry 28, 2592–2600). In the X‐ray structure of the wild‐type enzyme, Arg‐54 interacts with both the anhydride oxygen and a phosphate oxygen of carbamoyl...
X‐ray structure of glu 53 human lysozyme
- Kazuaki Harata, Michiro Muraki, Yasuhiro Hayashi, Yoshifumi Jigami
- Published in Wiley Interscience on Dec 31, 2008
- DOI: 10.1002/pro.5560011106 (p 1447-1453)
Abstract The three‐dimensional structure of a modified human lysozyme (HL), Glu 53 HL, in which Asp 53 was replaced by Glu, has been determined at 1.77 å resolution by X‐ray analysis. The backbone structure of Glu 53 HL is essentially the same as the structure of wild‐type HL. The root mean square difference for the superposition of equivalent Cα atoms is 0.141 å. Except for the Glu 53 residue, the structure of the active site region is largely...
A molecular model for membrane fusion based on solution studies of an amphiphilic peptide from HIV gp41
- Gary Fujii, Suzanna Horvath, Susan Woodward, Fred Eiserling, David Eisenberg
- Published in Wiley Interscience on Dec 31, 2008
- DOI: 10.1002/pro.5560011107 (p 1454-1464)
Abstract The mechanism of protein‐mediated membrane fusion and lysis has been investigated by solution‐state studies of the effects of peptides on liposomes. A peptide (SI) corresponding to a highly amphiphilic C‐terminal segment from the envelope protein (gp41) of the human immunodeficiency virus (HIV) was synthesized and tested for its ability to cause lipid membranes to fuse together (fusion) or to break open (lysis). These...
Modeling the antigen combining site of an anti‐dinitrophenyl antibody, ANO2
- Donna Bassolino‐Klimas, Robert E. Bruccoleri, Shankar Subramaniam
- Published in Wiley Interscience on Dec 31, 2008
- DOI: 10.1002/pro.5560011108 (p 1465-1476)
Abstract A model structure has been constructed for a monoclonal anti‐dinitrophenyl antibody. The antibody, ANO2, has been sequenced and cloned (Anglister, J., Frey, T., & McConnell, H.M., 1984, Biochemistry 23, 1138–1142). Its amino acid sequence shows striking homology with the anti‐lysozyme Fab fragments HyHel5 (83%) and HyHel10 (73%). Based on this homology, a model for the ANO2 variable heavy and variable light chain framework was...




