Article
Received: 9 December 2008; Accepted: 3 February 2009
10.1002/pro.96 About DOI
Structural origin of weakly ordered nitroxide motion in spin-labeled proteins |
| Mark R. Fleissner 1, Duilio Cascio 2, Wayne L. Hubbell 1 * |
| 1Jules Stein Eye Institute and Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-7008 2UCLA-DOE Institute for Genomics and Proteomics, University of California, Los Angeles, California 90095-1570 |
| email: Wayne L. Hubbell (hubbellw@jsei.ucla.edu) |
*Correspondence to Wayne L. Hubbell, Jules Stein Eye Institute, UCLA School of Medicine, Los Angeles, CA 90095-7008
Funded by:
NIH; Grant Number: EY05216
NIH/NEI; Grant Number: 5T32EY007026
Ruth L. Kirschstein National Research Service Award; Grant Number: GM07185
The Jules Stein Professor endowment
| Keywords |
| site-directed Spin Labeling nitroxide anisotropic motion nitroxide crystal structures |
| Abstract |
A disulfide-linked nitroxide side chain (R1) used in site-directed spin labeling of proteins often exhibits an EPR spectrum characteristic of a weakly ordered z-axis anisotropic motion at topographically diverse surface sites, including those on helices, loops and edge strands of -sheets. To elucidate the origin of this motion, the first crystal structures of R1 that display simple z-axis anisotropic motion at solvent-exposed helical sites (131 and 151) and a loop site (82) in T4 lysozyme have been determined. Structures of 131R1 and 151R1 determined at cryogenic or ambient temperature reveal an intraresidue C![]() H···S interaction that immobilizes the disulfide group, consistent with a model in which the internal motions of R1 are dominated by rotations about the two terminal bonds (Columbus, Kálai, Jeko, Hideg, and Hubbell, Biochemistry 2001;40:3828-3846). Remarkably, the 131R1 side chain populates two rotamers equally, but the EPR spectrum reflects a single dominant dynamic population, showing that the two rotamers have similar internal motion determined by the common disulfide-backbone interaction. The anisotropic motion for loop residue 82R1 is also accounted for by a common disulfide-backbone interaction, showing that the interaction does not require a specific secondary structure. If the above observations prove to be general, then significant variations in order and rate for R1 at noninteracting solvent-exposed helical and loop sites can be assigned to backbone motion because the internal motion is essentially constant. |
Received: 9 December 2008; Accepted: 3 February 2009
| Digital Object Identifier (DOI) |
10.1002/pro.96 About DOI




-sheets. To elucidate the origin of this motion, the first crystal structures of R1 that display simple z-axis anisotropic motion at solvent-exposed helical sites (131 and 151) and a loop site (82) in T4 lysozyme have been determined. Structures of 131R1 and 151R1 determined at cryogenic or ambient temperature reveal an intraresidue C
H···S
interaction that immobilizes the disulfide group, consistent with a model in which the internal motions of R1 are dominated by rotations about the two terminal bonds (Columbus, Kálai, Jeko, Hideg, and Hubbell, Biochemistry 2001;40:3828-3846). Remarkably, the 131R1 side chain populates two rotamers equally, but the EPR spectrum reflects a single dominant dynamic population, showing that the two rotamers have similar internal motion determined by the common disulfide-backbone interaction. The anisotropic motion for loop residue 82R1 is also accounted for by a common disulfide-backbone interaction, showing that the interaction does not require a specific secondary structure. If the above observations prove to be general, then significant variations in order and rate for R1 at noninteracting solvent-exposed helical and loop sites can be assigned to backbone motion because the internal motion is essentially constant.