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 Article
Mobile loop mutations in an archaeal inositol monophosphatase: Modulating three-metal ion assisted catalysis and lithium inhibition
Zheng Li 1, Kimberly A. Stieglitz 2, Anthony L. Shrout 3 a, Yang Wei 1, Robert M. Weis 3, Boguslaw Stec 4, Mary F. Roberts 1 *
1Department of Chemistry, Boston College, Chestnut Hill, Massachusetts 02467
2Science, Technology, Engineering, and Mathematics, Roxbury Community College, Boston, Massachusetts 02120
3Department of Chemistry, University of Massachusetts, Amherst, Massachusetts 01003
4The Burnham Institute for Medical Research, La Jolla, California 92037
email: Mary F. Roberts (mary.roberts@bc.edu)

*Correspondence to Mary F. Roberts, Department of Chemistry, Boston College, Chestnut Hill, MA 02467

aCurrent address: P.A. Technologies, LLC, Amherst, Massachusetts

Funded by:
 Department of Energy Biosciences; Grant Number: DE-FG02-91ER20025, NIGMS-68649

Keywords
inositol monophosphatase • metal-assisted catalysis • magnesium binding • mutagenesis • mobile loop • lithium inhibition

Abstract
The inositol monophosphatase (IMPase) enzyme from the hyperthermophilic archaeon Methanocaldococcus jannaschii requires Mg2+ for activity and binds three to four ions tightly in the absence of ligands: KD = 0.8 M for one ion with a KD of 38 M for the other Mg2+ ions. However, the enzyme requires 5-10 mM Mg2+ for optimum catalysis, suggesting substrate alters the metal ion affinity. In crystal structures of this archaeal IMPase with products, one of the three metal ions is coordinated by only one protein contact, Asp38. The importance of this and three other acidic residues in a mobile loop that approaches the active site was probed with mutational studies. Only D38A exhibited an increased kinetic KD for Mg2+; D26A, E39A, and E41A showed no significant change in the Mg2+ requirement for optimal activity. D38A also showed an increased Km, but little effect on kcat. This behavior is consistent with this side chain coordinating the third metal ion in the substrate complex, but with sufficient flexibility in the loop such that other acidic residues could position the Mg2+ in the active site in the absence of Asp38. While lithium ion inhibition of the archaeal IMPase is very poor (IC50250 mM), the D38A enzyme has a dramatically enhanced sensitivity to Li+ with an IC50 of 12 mM. These results constitute additional evidence for three metal ion assisted catalysis with substrate and product binding reducing affinity of the third necessary metal ion. They also suggest a specific mode of action for lithium inhibition in the IMPase superfamily.

Received: 23 March 2009; Revised: 20 November 2009; Accepted: 10 December 2009

Digital Object Identifier (DOI)

10.1002/pro.315  About DOI